Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2208774Fold d.169: C-type lectin-like [56435] (1 superfamily)
    unusual fold
  4. 2208775Superfamily d.169.1: C-type lectin-like [56436] (9 families) (S)
  5. 2208776Family d.169.1.1: C-type lectin domain [56437] (29 protein domains)
    Pfam PF00059
  6. 2209209Protein automated matches [190329] (9 species)
    not a true protein

Species:

  1. 2209210Agkistrodon rhodostoma [TaxId:8717] [188575] (1 PDB entry)
  2. 2209215Brachyopsis rostratus [TaxId:412977] [188571] (1 PDB entry)
  3. 2209217Cucumaria echinata [TaxId:40245] [271988] (1 PDB entry)
  4. 2209222Human (Homo sapiens) [TaxId:9606] [187151] (9 PDB entries)
    1. Domains for 2h2r:
      1. 2209226Domain d2h2ra_: 2h2r A: [241995]
        automated match to d1t8ca1
      2. 2209227Domain d2h2rb_: 2h2r B: [241996]
        automated match to d1t8ca1
    2. Domain for 2h2t:
    3. Domains for 3bdw:
      1. 2209248Domain d3bdwb_: 3bdw B: [199086]
        Other proteins in same PDB: d3bdwa_, d3bdwc_
        automated match to d1fm5a_
      2. 2209249Domain d3bdwd_: 3bdw D: [199087]
        Other proteins in same PDB: d3bdwa_, d3bdwc_
        automated match to d1fm5a_
    4. Domains for 3cck:
      1. 2209228Domain d3ccka_: 3cck A: [173139]
        automated match to d1fm5a_
        complexed with cl
      2. 2209229Domain d3cckb_: 3cck B: [173140]
        automated match to d1fm5a_
        complexed with cl
    5. Domain for 3cfw:
    6. Domains for 3hup:
      1. 2209223Domain d3hupa_: 3hup A: [177850]
        automated match to d1fm5a_
        complexed with cl, na
      2. 2209224Domain d3hupb_: 3hup B: [177851]
        automated match to d1fm5a_
        complexed with cl, na
    7. Domain for 3l9j:
    8. Domains for 4m17:
      1. 2209235Domain d4m17a_: 4m17 A: [229658]
        automated match to d4m17f1
        complexed with ca; mutant
      2. 2209236Domain d4m17b_: 4m17 B: [235522]
        automated match to d4m17a_
        complexed with ca; mutant
      3. 2209237Domain d4m17c1: 4m17 C:235-355 [229657]
        automated match to d1pwba1
        complexed with ca; mutant
      4. 2209238Domain d4m17d1: 4m17 D:235-355 [229431]
        automated match to d1pwba1
        complexed with ca; mutant
      5. 2209239Domain d4m17e1: 4m17 E:235-355 [229432]
        automated match to d1pwba1
        complexed with ca; mutant
      6. 2209240Domain d4m17f1: 4m17 F:235-355 [229430]
        automated match to d1pwba1
        complexed with ca; mutant
      7. 2209241Domain d4m17g_: 4m17 G: [229660]
        automated match to d4m17f1
        complexed with ca; mutant
      8. 2209242Domain d4m17h_: 4m17 H: [235521]
        automated match to d4m17a_
        complexed with ca; mutant
      9. 2209243Domain d4m17i_: 4m17 I: [229662]
        automated match to d4m17f1
        complexed with ca; mutant
      10. 2209244Domain d4m17j_: 4m17 J: [229661]
        automated match to d4m17f1
        complexed with ca; mutant
      11. 2209245Domain d4m17k_: 4m17 K: [229656]
        automated match to d4m17f1
        complexed with ca; mutant
      12. 2209246Domain d4m17l_: 4m17 L: [229659]
        automated match to d4m17f1
        complexed with ca; mutant
    9. Domains for 4pdc:
      1. 2209230Domain d4pdca_: 4pdc A: [257483]
        automated match to d1hyrb_
      2. 2209231Domain d4pdcb_: 4pdc B: [258115]
        automated match to d1hyrb_
      3. 2209232Domain d4pdcc_: 4pdc C: [263469]
        automated match to d1hyrb_
      4. 2209233Domain d4pdcd_: 4pdc D: [263470]
        automated match to d1hyrb_
  5. 2209250Human herpesvirus 4 (strain b95-8) [TaxId:10377] [255828] (1 PDB entry)
  6. 2209253Malayan pit viper (Calloselasma rhodostoma) [TaxId:8717] [188489] (3 PDB entries)
    1. Domains for 2vrp:
      1. 2209254Domain d2vrpa_: 2vrp A: [168775]
        automated match to d1y17a1
        complexed with cl, na
      2. 2209255Domain d2vrpb_: 2vrp B: [168776]
        automated match to d1iodb_
        complexed with cl, na
    2. Domains for 3wwk:
      1. 2209256Domain d3wwka_: 3wwk A: [260626]
        Other proteins in same PDB: d3wwkc_, d3wwke_, d3wwkf_, d3wwki_, d3wwkl_
        automated match to d3bx4c_
      2. 2209257Domain d3wwkb_: 3wwk B: [296133]
        Other proteins in same PDB: d3wwkc_, d3wwke_, d3wwkf_, d3wwki_, d3wwkl_
        automated match to d3bx4d_
      3. 2209258Domain d3wwkd_: 3wwk D: [260625]
        Other proteins in same PDB: d3wwkc_, d3wwke_, d3wwkf_, d3wwki_, d3wwkl_
        automated match to d3bx4c_
      4. 2209259Domain d3wwkg_: 3wwk G: [296135]
        Other proteins in same PDB: d3wwkc_, d3wwke_, d3wwkf_, d3wwki_, d3wwkl_
        automated match to d3wwka_
      5. 2209260Domain d3wwkh_: 3wwk H: [296136]
        Other proteins in same PDB: d3wwkc_, d3wwke_, d3wwkf_, d3wwki_, d3wwkl_
        automated match to d3bx4d_
      6. 2209261Domain d3wwkj_: 3wwk J: [296138]
        Other proteins in same PDB: d3wwkc_, d3wwke_, d3wwkf_, d3wwki_, d3wwkl_
        automated match to d3wwka_
      7. 2209262Domain d3wwkk_: 3wwk K: [296139]
        Other proteins in same PDB: d3wwkc_, d3wwke_, d3wwkf_, d3wwki_, d3wwkl_
        automated match to d3bx4d_
    3. Domains for 5thp:
      1. 2293932Domain d5thpa_: 5thp A: [337233]
        Other proteins in same PDB: d5thpc_, d5thpf_, d5thpi_, d5thpl_, d5thpo_, d5thpr_
        automated match to d1v4la_
        complexed with cl, gol, mg, na, so4
      2. 2293933Domain d5thpg_: 5thp G: [337234]
        Other proteins in same PDB: d5thpc_, d5thpf_, d5thpi_, d5thpl_, d5thpo_, d5thpr_
        automated match to d1v4la_
        complexed with cl, gol, mg, na, so4
      3. 2293937Domain d5thpb_: 5thp B: [337238]
        Other proteins in same PDB: d5thpc_, d5thpf_, d5thpi_, d5thpl_, d5thpo_, d5thpr_
        automated match to d1v7pb_
        complexed with cl, gol, mg, na, so4
      4. 2293938Domain d5thph_: 5thp H: [337239]
        Other proteins in same PDB: d5thpc_, d5thpf_, d5thpi_, d5thpl_, d5thpo_, d5thpr_
        automated match to d1v7pb_
        complexed with cl, gol, mg, na, so4
      5. 2293939Domain d5thpn_: 5thp N: [337240]
        Other proteins in same PDB: d5thpc_, d5thpf_, d5thpi_, d5thpl_, d5thpo_, d5thpr_
        automated match to d1v7pb_
        complexed with cl, gol, mg, na, so4
      6. 2293941Domain d5thpj_: 5thp J: [337242]
        Other proteins in same PDB: d5thpc_, d5thpf_, d5thpi_, d5thpl_, d5thpo_, d5thpr_
        automated match to d1v4la_
        complexed with cl, gol, mg, na, so4
      7. 2293951Domain d5thpe_: 5thp E: [337252]
        Other proteins in same PDB: d5thpc_, d5thpf_, d5thpi_, d5thpl_, d5thpo_, d5thpr_
        automated match to d1v7pb_
        complexed with cl, gol, mg, na, so4
      8. 2293955Domain d5thpd_: 5thp D: [337256]
        Other proteins in same PDB: d5thpc_, d5thpf_, d5thpi_, d5thpl_, d5thpo_, d5thpr_
        automated match to d1v4la_
        complexed with cl, gol, mg, na, so4
      9. 2293960Domain d5thpp_: 5thp P: [337261]
        Other proteins in same PDB: d5thpc_, d5thpf_, d5thpi_, d5thpl_, d5thpo_, d5thpr_
        automated match to d1v4la_
        complexed with cl, gol, mg, na, so4
      10. 2293977Domain d5thpm_: 5thp M: [337278]
        Other proteins in same PDB: d5thpc_, d5thpf_, d5thpi_, d5thpl_, d5thpo_, d5thpr_
        automated match to d1v4la_
        complexed with cl, gol, mg, na, so4
      11. 2294011Domain d5thpk_: 5thp K: [337312]
        Other proteins in same PDB: d5thpc_, d5thpf_, d5thpi_, d5thpl_, d5thpo_, d5thpr_
        automated match to d1v7pb_
        complexed with cl, gol, mg, na, so4
      12. 2294073Domain d5thpq_: 5thp Q: [337374]
        Other proteins in same PDB: d5thpc_, d5thpf_, d5thpi_, d5thpl_, d5thpo_, d5thpr_
        automated match to d1v7pb_
        complexed with cl, gol, mg, na, so4
  7. 2209263Mouse (Mus musculus) [TaxId:10090] [187300] (3 PDB entries)
    1. Domain for 3c8k:
    2. Domains for 3cad:
      1. 2209267Domain d3cada_: 3cad A: [199175]
        automated match to d3cadb_
      2. 2209268Domain d3cadb_: 3cad B: [195143]
        automated match to d3g8ka_
    3. Domains for 3g8k:
      1. 2209264Domain d3g8ka_: 3g8k A: [176420]
        automated match to d1qo3c_
      2. 2209265Domain d3g8kb_: 3g8k B: [176421]
        automated match to d1qo3c_
  8. 2209269Sharp-nosed viper (Deinagkistrodon acutus) [TaxId:36307] [195597] (1 PDB entry)
  9. 2283562Bothrops jararacussu [TaxId:8726] [326863] (1 PDB entry)

More info for Protein automated matches from d.169.1.1: C-type lectin domain

Timeline for Protein automated matches from d.169.1.1: C-type lectin domain: