SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
Fold d.79: Bacillus chorismate mutase-like [55297] (9 superfamilies)
core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest

Superfamily d.79.1: YjgF-like [55298] (3 families)

(S)

forms trimers with three closely packed beta-sheets; possibly related to the IspF (d.79.5) and 4'-phosphopantetheinyl transferase superfamilies (d.150.1)

Family d.79.1.1: YjgF/L-PSP [55299] (12 proteins)
some members possess an endoribonuclease activity inhibiting mRNA translation
Protein automated matches [190254] (5 species)
not a true protein

Species:

Escherichia coli [TaxId:562] [188034] (4 PDB entries)
1. Domains for 2uyj:
  1. Domain d2uyja_: 2uyj A: [168230]
    automated match to d1qu9a_
    complexed with edo
  2. Domain d2uyjb_: 2uyj B: [168231]
    automated match to d1qu9a_
    complexed with edo
  3. Domain d2uyjc_: 2uyj C: [168232]
    automated match to d1qu9a_
    complexed with edo
2. Domains for 2uyk:
  1. Domain d2uyka_: 2uyk A: [168233]
    automated match to d1qu9a_
    complexed with ser
  2. Domain d2uykb_: 2uyk B: [168234]
    automated match to d1qu9a_
    complexed with ser
  3. Domain d2uykc_: 2uyk C: [168235]
    automated match to d1qu9a_
    complexed with ser
3. Domains for 2uyn:
  1. Domain d2uyna_: 2uyn A: [168236]
    automated match to d1qu9a_
    complexed with 2kt
  2. Domain d2uynb_: 2uyn B: [168237]
    automated match to d1qu9a_
    complexed with 2kt
  3. Domain d2uync_: 2uyn C: [168238]
    automated match to d1qu9a_
    complexed with 2kt
4. Domains for 2uyp:
  1. Domain d2uypa_: 2uyp A: [168239]
    automated match to d1qu9a_
    complexed with ppi
  2. Domain d2uypb_: 2uyp B: [168240]
    automated match to d1qu9a_
    complexed with ppi
  3. Domain d2uypc_: 2uyp C: [168241]
    automated match to d1qu9a_
    complexed with ppi
Pyrococcus horikoshii [TaxId:53953] [187648] (1 PDB entry)
- Domains for 2dyy:
  1. Domain d2dyya_: 2dyy A: [163743]
    automated match to d1x25a1
  2. Domain d2dyyb_: 2dyy B: [163744]
    automated match to d1x25a1
  3. Domain d2dyyc_: 2dyy C: [163745]
    automated match to d1x25a1
  4. Domain d2dyyd_: 2dyy D: [163746]
    automated match to d1x25a1
  5. Domain d2dyye_: 2dyy E: [163747]
    automated match to d1x25a1
  6. Domain d2dyyf_: 2dyy F: [163748]
    automated match to d1x25a1
  7. Domain d2dyyg_: 2dyy G: [163749]
    automated match to d1x25a1
  8. Domain d2dyyh_: 2dyy H: [163750]
    automated match to d1x25a1
  9. Domain d2dyyi_: 2dyy I: [163751]
    automated match to d1x25a1
  10. Domain d2dyyj_: 2dyy J: [163752]
    automated match to d1x25a1
  11. Domain d2dyyk_: 2dyy K: [163753]
    automated match to d1x25a1
  12. Domain d2dyyl_: 2dyy L: [163754]
    automated match to d1x25a1
Salmo salar [TaxId:8030] [391863] (2 PDB entries)
1. Domain for 6tcc:
  - Domain d6tcca_: 6tcc A: [391876]
    automated match to d1onia_
    complexed with act, edo, peg
2. Domains for 6tcd:
  1. Domain d6tcda_: 6tcd A: [391864]
    Other proteins in same PDB: d6tcdb2, d6tcdc2, d6tcdd2, d6tcde2
    automated match to d1nq3a_
    complexed with act, so4
  2. Domain d6tcdb1: 6tcd B:3-130 [391866]
    Other proteins in same PDB: d6tcdb2, d6tcdc2, d6tcdd2, d6tcde2
    automated match to d1nq3a_
    complexed with act, so4
  3. Domain d6tcdc1: 6tcd C:3-130 [392009]
    Other proteins in same PDB: d6tcdb2, d6tcdc2, d6tcdd2, d6tcde2
    automated match to d1nq3a_
    complexed with act, so4
  4. Domain d6tcdd1: 6tcd D:1-131 [391898]
    Other proteins in same PDB: d6tcdb2, d6tcdc2, d6tcdd2, d6tcde2
    automated match to d1nq3a_
    complexed with act, so4
  5. Domain d6tcde1: 6tcd E:3-131 [391865]
    Other proteins in same PDB: d6tcdb2, d6tcdc2, d6tcdd2, d6tcde2
    automated match to d1nq3a_
    complexed with act, so4
  6. Domain d6tcdf_: 6tcd F: [391929]
    Other proteins in same PDB: d6tcdb2, d6tcdc2, d6tcdd2, d6tcde2
    automated match to d1nq3a_
    complexed with act, so4
Thermus thermophilus HB8 [TaxId:300852] [187037] (1 PDB entry)
- Domains for 2csl:
  1. Domain d2cslb_: 2csl B: [130773]
    Other proteins in same PDB: d2csla1
    automated match to d1xrga_
  2. Domain d2cslc_: 2csl C: [130774]
    Other proteins in same PDB: d2csla1
    automated match to d1xrga_
  3. Domain d2csld_: 2csl D: [130775]
    Other proteins in same PDB: d2csla1
    automated match to d1xrga_
  4. Domain d2csle_: 2csl E: [130776]
    Other proteins in same PDB: d2csla1
    automated match to d1xrga_
  5. Domain d2cslf_: 2csl F: [130777]
    Other proteins in same PDB: d2csla1
    automated match to d1xrga_
Thermus thermophilus [TaxId:274] [187040] (2 PDB entries)
1. Domains for 2cvl:
  1. Domain d2cvla_: 2cvl A: [130871]
    automated match to d1xrga_
  2. Domain d2cvlb_: 2cvl B: [130872]
    automated match to d1xrga_
  3. Domain d2cvlc_: 2cvl C: [130873]
    automated match to d1xrga_
  4. Domain d2cvld_: 2cvl D: [130874]
    automated match to d1xrga_
  5. Domain d2cvle_: 2cvl E: [130875]
    automated match to d1xrga_
  6. Domain d2cvlf_: 2cvl F: [130876]
    automated match to d1xrga_
2. Domain for 2cw4:
  - Domain d2cw4a_: 2cw4 A: [130919]
    automated match to d1xrga_

More info for Protein automated matches from d.79.1.1: YjgF/L-PSP

Timeline for Protein automated matches from d.79.1.1: YjgF/L-PSP:

Protein automated matches from d.79.1.1: YjgF/L-PSP first appeared in SCOPe 2.01
Protein automated matches from d.79.1.1: YjgF/L-PSP appears in SCOPe 2.06
Protein automated matches from d.79.1.1: YjgF/L-PSP appears in the current release, SCOPe 2.08