SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2164133Fold d.20: UBC-like [54494] (1 superfamily)
    alpha-beta(4)-alpha(3); core: meander beta-sheet plus one helix 2
  4. 2164134Superfamily d.20.1: UBC-like [54495] (5 families) (S)
  5. 2164520Family d.20.1.0: automated matches [191322] (1 protein)
    not a true family
  6. 2164521Protein automated matches [190120] (8 species)
    not a true protein

Species:

  1. 2164522Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [226239] (1 PDB entry)
  2. 2164524Cow (Bos taurus) [TaxId:9913] [186972] (1 PDB entry)
  3. 2164526Human (Homo sapiens) [TaxId:9606] [186843] (17 PDB entries)
    1. Domain for 1wzv:
    2. Domain for 1wzw:
    3. Domain for 1zdn:
    4. Domain for 2ebk:
    5. Domain for 2ebm:
    6. Domain for 2edi:
    7. Domain for 2ob4:
    8. Domain for 3fn1:
    9. Domains for 3rz3:
      1. 2164533Domain d3rz3a1: 3rz3 A:7-183 [216129]
        Other proteins in same PDB: d3rz3a2, d3rz3b2
        automated match to d2cyxa_
        complexed with u94
      2. 2164534Domain d3rz3b1: 3rz3 B:7-183 [216130]
        Other proteins in same PDB: d3rz3a2, d3rz3b2
        automated match to d2cyxa_
        complexed with u94
      3. 2164535Domain d3rz3c_: 3rz3 C: [216131]
        Other proteins in same PDB: d3rz3a2, d3rz3b2
        automated match to d2cyxa_
        complexed with u94
      4. 2164536Domain d3rz3d_: 3rz3 D: [216132]
        Other proteins in same PDB: d3rz3a2, d3rz3b2
        automated match to d2cyxa_
        complexed with u94
    10. Domain for 4ip3:
    11. Domains for 4mdk:
      1. 2164540Domain d4mdka_: 4mdk A: [229757]
        Other proteins in same PDB: d4mdke1, d4mdke2, d4mdkf1, d4mdkf2, d4mdkg_, d4mdkh1, d4mdkh2
        automated match to d2ob4a_
        complexed with u94
      2. 2164541Domain d4mdkb_: 4mdk B: [229680]
        Other proteins in same PDB: d4mdke1, d4mdke2, d4mdkf1, d4mdkf2, d4mdkg_, d4mdkh1, d4mdkh2
        automated match to d2ob4a_
        complexed with u94
      3. 2164542Domain d4mdkc_: 4mdk C: [229685]
        Other proteins in same PDB: d4mdke1, d4mdke2, d4mdkf1, d4mdkf2, d4mdkg_, d4mdkh1, d4mdkh2
        automated match to d2ob4a_
        complexed with u94
      4. 2164543Domain d4mdkd_: 4mdk D: [229681]
        Other proteins in same PDB: d4mdke1, d4mdke2, d4mdkf1, d4mdkf2, d4mdkg_, d4mdkh1, d4mdkh2
        automated match to d2ob4a_
        complexed with u94
    12. Domain for 4q5e:
    13. Domain for 4q5h:
    14. Domain for 4w5v:
    15. Domain for 4y1l:
    16. Domain for 4yii:
    17. Domains for 5hpt:
      1. 2271493Domain d5hptf_: 5hpt F: [314794]
        Other proteins in same PDB: d5hptb_, d5hpte_, d5hpth_
        automated match to d2e2ca_
      2. 2271616Domain d5hptc_: 5hpt C: [314917]
        Other proteins in same PDB: d5hptb_, d5hpte_, d5hpth_
        automated match to d2e2ca_
  4. 2164549Plasmodium falciparum [TaxId:36329] [187332] (2 PDB entries)
    1. Domain for 2q0v:
    2. Domain for 3e95:
  5. 2164552Plasmodium yoelii [TaxId:5861] [255550] (1 PDB entry)
  6. 2164554Trypanosoma cruzi [TaxId:5693] [234333] (1 PDB entry)
  7. 2268325Arabidopsis thaliana [TaxId:3702] [311631] (1 PDB entry)
  8. 2286486Schizosaccharomyces pombe [TaxId:284812] [329787] (1 PDB entry)

More info for Protein automated matches from d.20.1.0: automated matches

Timeline for Protein automated matches from d.20.1.0: automated matches: