Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1449807Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds)
  3. 1453554Fold e.18: HydB/Nqo4-like [56761] (1 superfamily)
    3 domains: (1) all-alpha; (2&3) alpha+beta
  4. 1453555Superfamily e.18.1: HydB/Nqo4-like [56762] (3 families) (S)
  5. 1453556Family e.18.1.1: Nickel-iron hydrogenase, large subunit [56763] (2 proteins)
  6. 1453587Protein automated matches [190109] (5 species)
    not a true protein

Species:

  1. 1453588Desulfomicrobium baculatum [TaxId:525897] [226721] (6 PDB entries)
    1. Domains for 4kl8:
      1. 1453595Domain d4kl8l_: 4kl8 L: [224351]
        Other proteins in same PDB: d4kl8s_, d4kl8t_
        automated match to d1cc1l_
        complexed with ca, cl, fco, gol, h2s, ni, sf4
      2. 1453596Domain d4kl8m_: 4kl8 M: [224352]
        Other proteins in same PDB: d4kl8s_, d4kl8t_
        automated match to d1cc1l_
        complexed with ca, cl, fco, gol, h2s, ni, sf4
    2. Domains for 4kn9:
      1. 1453589Domain d4kn9l_: 4kn9 L: [224403]
        Other proteins in same PDB: d4kn9s_, d4kn9t_
        automated match to d1cc1l_
        complexed with ca, cl, fco, gol, h2s, ni, sf4
      2. 1453590Domain d4kn9m_: 4kn9 M: [224404]
        Other proteins in same PDB: d4kn9s_, d4kn9t_
        automated match to d1cc1l_
        complexed with ca, cl, fco, gol, h2s, ni, sf4
    3. Domains for 4ko1:
      1. 1453591Domain d4ko1l_: 4ko1 L: [224415]
        Other proteins in same PDB: d4ko1s_, d4ko1t_
        automated match to d1cc1l_
        complexed with ca, fco, gol, h2s, ni, sf4
      2. 1453592Domain d4ko1m_: 4ko1 M: [224416]
        Other proteins in same PDB: d4ko1s_, d4ko1t_
        automated match to d1cc1l_
        complexed with ca, fco, gol, h2s, ni, sf4
    4. Domains for 4ko2:
      1. 1453593Domain d4ko2l_: 4ko2 L: [224419]
        Other proteins in same PDB: d4ko2s_, d4ko2t_
        automated match to d1cc1l_
        complexed with ca, fco, gol, h2s, ni, sf4
      2. 1453594Domain d4ko2m_: 4ko2 M: [224420]
        Other proteins in same PDB: d4ko2s_, d4ko2t_
        automated match to d1cc1l_
        complexed with ca, fco, gol, h2s, ni, sf4
    5. Domains for 4ko3:
      1. 1453599Domain d4ko3l_: 4ko3 L: [224423]
        Other proteins in same PDB: d4ko3s_, d4ko3t_
        automated match to d1cc1l_
        complexed with ca, cl, fco, gol, h2s, ni, sf4
      2. 1453600Domain d4ko3m_: 4ko3 M: [224424]
        Other proteins in same PDB: d4ko3s_, d4ko3t_
        automated match to d1cc1l_
        complexed with ca, cl, fco, gol, h2s, ni, sf4
    6. Domains for 4ko4:
      1. 1453597Domain d4ko4l_: 4ko4 L: [224427]
        Other proteins in same PDB: d4ko4s_, d4ko4t_
        automated match to d1cc1l_
        complexed with ca, cl, fco, gol, h2s, ni, sf4
      2. 1453598Domain d4ko4m_: 4ko4 M: [224428]
        Other proteins in same PDB: d4ko4s_, d4ko4t_
        automated match to d1cc1l_
        complexed with ca, cl, fco, gol, h2s, ni, sf4
  2. 1453601Desulfovibrio fructosovorans [TaxId:878] [188150] (5 PDB entries)
    1. Domains for 1yqw:
      1. 1453602Domain d1yqwq_: 1yqw Q: [162282]
        Other proteins in same PDB: d1yqwa_, d1yqwb_, d1yqwc_
        automated match to d1e3db_
        complexed with bct, f3s, fco, fe2, gol, mg, ni, per, sf4
      2. 1453603Domain d1yqwr_: 1yqw R: [162283]
        Other proteins in same PDB: d1yqwa_, d1yqwb_, d1yqwc_
        automated match to d1e3db_
        complexed with bct, f3s, fco, fe2, gol, mg, ni, per, sf4
      3. 1453604Domain d1yqws_: 1yqw S: [162284]
        Other proteins in same PDB: d1yqwa_, d1yqwb_, d1yqwc_
        automated match to d1e3db_
        complexed with bct, f3s, fco, fe2, gol, mg, ni, per, sf4
    2. Domains for 1yrq:
      1. 1453605Domain d1yrqh_: 1yrq H: [162292]
        Other proteins in same PDB: d1yrqa_, d1yrqb_, d1yrqc_, d1yrqd_, d1yrqf_, d1yrqg_
        automated match to d1e3db_
        complexed with f3s, fco, mg, ni, sf4
      2. 1453606Domain d1yrqi_: 1yrq I: [162293]
        Other proteins in same PDB: d1yrqa_, d1yrqb_, d1yrqc_, d1yrqd_, d1yrqf_, d1yrqg_
        automated match to d1e3db_
        complexed with f3s, fco, mg, ni, sf4
      3. 1453607Domain d1yrqj_: 1yrq J: [162294]
        Other proteins in same PDB: d1yrqa_, d1yrqb_, d1yrqc_, d1yrqd_, d1yrqf_, d1yrqg_
        automated match to d1e3db_
        complexed with f3s, fco, mg, ni, sf4
      4. 1453608Domain d1yrqk_: 1yrq K: [162295]
        Other proteins in same PDB: d1yrqa_, d1yrqb_, d1yrqc_, d1yrqd_, d1yrqf_, d1yrqg_
        automated match to d1e3db_
        complexed with f3s, fco, mg, ni, sf4
      5. 1453609Domain d1yrqm_: 1yrq M: [162296]
        Other proteins in same PDB: d1yrqa_, d1yrqb_, d1yrqc_, d1yrqd_, d1yrqf_, d1yrqg_
        automated match to d1e3db_
        complexed with f3s, fco, mg, ni, sf4
      6. 1453610Domain d1yrqn_: 1yrq N: [162297]
        Other proteins in same PDB: d1yrqa_, d1yrqb_, d1yrqc_, d1yrqd_, d1yrqf_, d1yrqg_
        automated match to d1e3db_
        complexed with f3s, fco, mg, ni, sf4
    3. Domains for 3cur:
      1. 1453611Domain d3curh_: 3cur H: [173475]
        Other proteins in same PDB: d3cura_, d3curb_, d3curc_
        automated match to d1e3db_
        complexed with f3s, fco, gol, mg, ni, per, sf4; mutant
      2. 1453612Domain d3curi_: 3cur I: [173476]
        Other proteins in same PDB: d3cura_, d3curb_, d3curc_
        automated match to d1e3db_
        complexed with f3s, fco, gol, mg, ni, per, sf4; mutant
      3. 1453613Domain d3curj_: 3cur J: [173477]
        Other proteins in same PDB: d3cura_, d3curb_, d3curc_
        automated match to d1e3db_
        complexed with f3s, fco, gol, mg, ni, per, sf4; mutant
    4. Domains for 3cus:
      1. 1453614Domain d3cusq_: 3cus Q: [173481]
        Other proteins in same PDB: d3cusa_, d3cusb_, d3cusc_
        automated match to d1e3db_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
      2. 1453615Domain d3cusr_: 3cus R: [173482]
        Other proteins in same PDB: d3cusa_, d3cusb_, d3cusc_
        automated match to d1e3db_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
      3. 1453616Domain d3cuss_: 3cus S: [173483]
        Other proteins in same PDB: d3cusa_, d3cusb_, d3cusc_
        automated match to d1e3db_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
    5. Domains for 3h3x:
      1. 1453617Domain d3h3xq_: 3h3x Q: [177172]
        Other proteins in same PDB: d3h3xa_, d3h3xb_, d3h3xc_
        automated match to d1e3db_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
      2. 1453618Domain d3h3xr_: 3h3x R: [177173]
        Other proteins in same PDB: d3h3xa_, d3h3xb_, d3h3xc_
        automated match to d1e3db_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
      3. 1453619Domain d3h3xs_: 3h3x S: [177174]
        Other proteins in same PDB: d3h3xa_, d3h3xb_, d3h3xc_
        automated match to d1e3db_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
  3. 1453620Desulfovibrio gigas [TaxId:879] [188148] (1 PDB entry)
  4. 1453622Desulfovibrio vulgaris [TaxId:882] [189199] (6 PDB entries)
    1. Domain for 2wpn:
    2. Domain for 3ze6:
    3. Domain for 3ze7:
    4. Domain for 3ze8:
    5. Domain for 3ze9:
    6. Domain for 3zea:
  5. 1453629Desulfovibrio vulgaris [TaxId:883] [186833] (5 PDB entries)
    1. Domain for 1wuh:
    2. Domain for 1wui:
    3. Domain for 1wuj:
    4. Domain for 1wuk:
    5. Domain for 1wul:

More info for Protein automated matches from e.18.1.1: Nickel-iron hydrogenase, large subunit

Timeline for Protein automated matches from e.18.1.1: Nickel-iron hydrogenase, large subunit: