SCOPe 2.07: Domain d3ubqe1: 3ubq E:11-325

Lineage for d3ubqe1 (3ubq E:11-325)

1. Root: SCOPe 2.07

2. Class b: All beta proteins [48724] (178 folds)

3. Fold b.19: Viral protein domain [49817] (1 superfamily)
   sandwich; 9 strands in 2 sheets; jelly-roll; form trimers

4. Superfamily b.19.1: Viral protein domain [49818] (4 families)
   forms homotrimers

5. Family b.19.1.2: Influenza hemagglutinin headpiece [49823] (2 proteins)

6. Protein Hemagglutinin [49824] (19 species)
   includes rudiment esterase domain

7. Species Influenza A virus, different strains [TaxId:11320] [49825] (127 PDB entries)

8. Domain d3ubqe1: 3ubq E:11-325 [186218]
   Other proteins in same PDB: d3ubqb_, d3ubqd_, d3ubqe2, d3ubqf_, d3ubqh_, d3ubqj_, d3ubql_
   automated match to d1ruyh_
   complexed with gal, nag, sia

Details for d3ubqe1

PDB Entry: 3ubq, 2 Å

PDB Description: influenza hemagglutinin from the 2009 pandemic in complex with ligand 3sln

PDB Compounds: (E:) hemagglutinin HA1

SCOPe Domain Sequences for d3ubqe1:

Sequence, based on SEQRES records:

>d3ubqe1 b.19.1.2 (E:11-325) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
dtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniagw
ilgnpeceslstasswsyivetpssdngtcypgdfidyeelreqlssvssferfeifpkt
sswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgih
hpstsadqqslyqnadtyvfvcssryskkfkpeiaicpkvrdqegrmnyywtlvepgdki
tfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpiti
gkcpkyvkstklrlatglrnips

Sequence, based on observed residues (ATOM records):

>d3ubqe1 b.19.1.2 (E:11-325) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
dtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniagw
ilgnpectasswsyivetpssdngtcypgdfidyeelreqlssvssferfeifpktsswp
nhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgihhpst
sadqqslyqnadtyvfvcssryskkfkpeiaicpkvrdqegrmnyywtlvepgdkitfea
tgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpitigkcp
kyvkstklrlatglrnips

Timeline for d3ubqe1:

• d3ubqe1 first appeared in SCOPe 2.01, called d3ubqe_
  
• d3ubqe1 appears in SCOPe 2.06
  
• d3ubqe1 appears in the current release, SCOPe 2.08