SCOPe 2.07: Domain d2r7zb1: 2r7z B:20-1224

Lineage for d2r7zb1 (2r7z B:20-1224)

1. Root: SCOPe 2.07

2. Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)

3. Fold e.29: beta and beta-prime subunits of DNA dependent RNA-polymerase [64483] (1 superfamily)
   Multidomain subunits of complex domain organization

4. Superfamily e.29.1: beta and beta-prime subunits of DNA dependent RNA-polymerase [64484] (3 families)
   The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit

5. Family e.29.1.1: RNA-polymerase beta [64485] (4 proteins)

6. Protein RBP2 [64491] (2 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [64492] (27 PDB entries)
   Uniprot P08518; part of multichain biological unit

8. Domain d2r7zb1: 2r7z B:20-1224 [151659]
   Other proteins in same PDB: d2r7za1, d2r7zd1, d2r7zf1, d2r7zg1, d2r7zh1, d2r7zj1, d2r7zk1, d2r7zl1
   automatically matched to d1i50b_
   protein/DNA complex; protein/RNA complex; complexed with cpt, mg, zn

Details for d2r7zb1

PDB Entry: 2r7z, 3.8 Å

PDB Description: cisplatin lesion containing rna polymerase ii elongation complex

PDB Compounds: (B:) DNA-directed RNA polymerase II subunit RPB2

SCOPe Domain Sequences for d2r7zb1:

Sequence, based on SEQRES records:

>d2r7zb1 e.29.1.1 (B:20-1224) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
desapitaedswavisaffrekglvsqqldsfnqfvdytlqdiicedstlileqlaqhtt
esdnisrkyeisfgkiyvtkpmvnesdgvthalypqearlrnltyssglfvdvkkrtyea
idvpgrelkyeliaeeseddsesgkvfigrlpimlrskncylseatesdlyklkecpfdm
ggyfiingsekvliaqersagnivqvfkkaapspishvaeirsalekgsrfistlqvkly
gregssartikatlpyikqdipiviifralgiipdgeilehicydvndwqmlemlkpcve
dgfviqdretaldfigrrgtalgikkekriqyakdilqkeflphitqlegfesrkafflg
yminrlllcaldrkdqddrdhfgkkrldlagpllaqlfktlfkkltkdifrymqrtveea
hdfnmklainaktitsglkyalatgnwgeqkkamssragvsqvlnrytysstlshlrrtn
tpigrdgklakprqlhnthwglvcpaetpegqacglvknlslmscisvgtdpmpiitfls
ewgmepledyvphqspdatrvfvngvwhgvhrnparlmetlrtlrrkgdinpevsmirdi
rekelkiftdagrvyrplfiveddeslghkelkvrkghiaklmateyqdieggfedveey
twssllneglveyidaeeeesiliamqpedlepaeaneendldvdpakrirvshhattft
hceihpsmilgvaasiipfpdhnqsprntyqsamgkqamgvfltnynvrmdtmanilyyp
qkplgttrameylkfrelpagqnaivaiacysgynqedsmimnqssidrglfrslffrsy
mdqekkygmsitetfekpqrtntlrmkhgtydkldddgliapgvrvsgedviigkttpis
pdeeelgqrtayhskrdastplrstengivdqvlvttnqdglkfvkvrvrttkipqigdk
fasrhgqkgtigityrredmpftaegivpdliinphaipsrmtvahliecllskvaalsg
negdaspftditvegiskllrehgyqsrgfevmynghtgkklmaqiffgptyyqrlrhmv
ddkiharargpmqvltrqpvegrsrdgglrfgemerdcmiahgaasflkerlmeasdafr
vhicgicglmtviaklnhnqfeckgcdnkidiyqihipyaakllfqelmamnitprlytd
rsrdf

Sequence, based on observed residues (ATOM records):

>d2r7zb1 e.29.1.1 (B:20-1224) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
desapitaedswavisaffrekglvsqqldsfnqfvdytlqdiicedstliisfgkiyvt
kpmvnesdgvthalypqearlrnltyssglfvdvkkkvfigrlpimlrskncylseates
dlyklkecpfdmggyfiingsekvliaqersagnivqvfkkaapspishvaeirsalekg
srfistlqvklygregssartikatlpyikqdipiviifralgiipdgeilehicydvnd
wqmlemlkpcvedgfviqdretaldfigkekriqyakdilqkeflphitqlegfesrkaf
flgyminrlllcaldrkdqddrdhfgkkrldlagpllaqlfktlfkkltkdifrymqrtv
elainaktitsglkyalatgnwgeqkkamssragvsqvlnrytysstlshlrrtntpikl
akprqlhnthwglvcpaetpegqacglvknlslmscisvgtdpmpiitflsewgmepled
yvphqspdatrvfvngvwhgvhrnparlmetlrtlrrkgdinpevsmirdirekelkift
dagrvyrplfiveddeslghkelkvrkghiaklmateyqdeytwssllneglveyidaee
eesiliamqpedlepaeadvdpakrirvshhattfthceihpsmilgvaasiipfpdhnq
sprntyqsamgkqamgvfltnynvrmdtmanilyypqkplgttrameylkfrelpagqna
ivaiacysgynqedsmimnqssidrglfrslffrsymdqekkygmsitetfekpqrtntl
rmkhgtydkldddgliapgvrvsgedviigkttpisskrdastplrstengivdqvlvtt
nqdglkfvkvrvrttkipqigdkfasrhgqkgtigityrredmpftaegivpdliinpha
ipsrmtvahliecllskvaalsgnegdaspftditvegiskllrehgyqsrgfevmyngh
tgkklmaqiffgptyyqrlrhmvddkiharargpmqvltrqpvegrsrdgglrfgemerd
cmiahgaasflkerlmeasdafrvhicgicglmtviaklnhnqfeckgcdnkidiyqihi
pyaakllfqelmamnitprlytdrsrdf

Timeline for d2r7zb1:

• d2r7zb1 first appeared in SCOP 1.75
  
• d2r7zb1 appears in SCOPe 2.06
  
• d2r7zb1 appears in the current release, SCOPe 2.08