SCOPe 2.08: Domain d2gycq1: 2gyc Q:5-110

Lineage for d2gycq1 (2gyc Q:5-110)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.55: Ribosomal protein L22 [54842] (1 superfamily)
   beta-alpha(3)-beta(2); 2 layers: alpha/beta; related to the enolase/MLE N-domain fold by a circular permutation

4. Superfamily d.55.1: Ribosomal protein L22 [54843] (1 family)
   some topological similarity to prokaryotic ribosomal protein L17

5. Family d.55.1.1: Ribosomal protein L22 [54844] (1 protein)

6. Protein Ribosomal protein L22 [54845] (5 species)

7. Species Escherichia coli [TaxId:562] [160266] (29 PDB entries)
   Uniprot P61175 1-110

8. Domain d2gycq1: 2gyc Q:5-110 [145273]
   Other proteins in same PDB: d2gyc11, d2gyc31, d2gyc32, d2gyc51, d2gyc52, d2gycb1, d2gycc1, d2gycd1, d2gycf1, d2gycf2, d2gycg1, d2gycg2, d2gych1, d2gyci1, d2gycj1, d2gyck1, d2gycm1, d2gycn1, d2gyco1, d2gycs1, d2gyct1, d2gycu1, d2gycw1, d2gycx1
   protein/RNA complex
   protein/RNA complex

Details for d2gycq1

PDB Entry: 2gyc, 15 Å

PDB Description: Structure of the 50S subunit of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

PDB Compounds: (Q:) 50S ribosomal protein L22

SCOPe Domain Sequences for d2gycq1:

Sequence; same for both SEQRES and ATOM records:

>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]}
akhrharssaqkvrlvadlirgkkvsqaldiltytnkkaavlvkkvlesaianaehndga
diddlkvtkifvdegpsmkrimprakgradrilkrtshitvvvsdr

Timeline for d2gycq1:

• d2gycq1 first appeared in SCOP 1.75
  
• d2gycq1 appears in SCOPe 2.07