SCOPe 2.08: Domain d2gya11: 2gya 1:1-52

Lineage for d2gya11 (2gya 1:1-52)

1. Root: SCOPe 2.08

2. Class g: Small proteins [56992] (100 folds)

3. Fold g.41: Rubredoxin-like [57769] (17 superfamilies)
   metal(zinc or iron)-bound fold; sequence contains two CX(n)C motifs, in most cases n = 2

4. Superfamily g.41.8: Zn-binding ribosomal proteins [57829] (8 families)

5. Family g.41.8.6: Ribosomal protein L33p [144203] (1 protein)
   Pfam PF00471; corresponds structurally and functionally to the ribosomal L44e from eukaryota and archaea; metal ion-binding site is lost in most members

6. Protein Ribosomal protein L33p [144204] (3 species)

7. Species Escherichia coli [TaxId:562] [144205] (9 PDB entries)
   Uniprot P0A7N9 1-54

8. Domain d2gya11: 2gya 1:1-52 [135833]
   Other proteins in same PDB: d2gya31, d2gya32, d2gya51, d2gya52, d2gyab1, d2gyac1, d2gyad1, d2gyaf1, d2gyaf2, d2gyag1, d2gyag2, d2gyah1, d2gyai1, d2gyaj1, d2gyak1, d2gyam1, d2gyan1, d2gyao1, d2gyaq1, d2gyas1, d2gyat1, d2gyau1, d2gyaw1, d2gyax1

Details for d2gya11

PDB Entry: 2gya, 15 Å

PDB Description: Structure of the 50S subunit of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

PDB Compounds: (1:) 50S ribosomal protein L33

SCOPe Domain Sequences for d2gya11:

Sequence; same for both SEQRES and ATOM records:

>d2gya11 g.41.8.6 (1:1-52) Ribosomal protein L33p {Escherichia coli [TaxId: 562]}
akgirekiklvssagtghfytttknkrtkpeklelkkfdpvvrqhviykeak

Timeline for d2gya11:

• d2gya11 first appeared in SCOP 1.73
  
• d2gya11 appears in SCOPe 2.07