Lineage for d2ga9a1 (2ga9 A:1-297)

  1. Root: SCOP 1.73
  2. 681097Class c: Alpha and beta proteins (a/b) [51349] (141 folds)
  3. 704539Fold c.66: S-adenosyl-L-methionine-dependent methyltransferases [53334] (1 superfamily)
    core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest
  4. 704540Superfamily c.66.1: S-adenosyl-L-methionine-dependent methyltransferases [53335] (52 families) (S)
  5. 704950Family c.66.1.25: mRNA cap methylase [88785] (2 proteins)
  6. 704956Protein Polymerase regulatory subunit VP39 [53361] (1 species)
  7. 704957Species Vaccinia virus [TaxId:10245] [53362] (19 PDB entries)
  8. 704968Domain d2ga9a1: 2ga9 A:1-297 [134885]
    automatically matched to d1vpt__
    complexed with ca, sap; mutant

Details for d2ga9a1

PDB Entry: 2ga9 (more details), 2.3 Å

PDB Description: crystal structure of the heterodimeric vaccinia virus polyadenylate polymerase with bound atp-gamma-s
PDB Compounds: (A:) Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase

SCOP Domain Sequences for d2ga9a1:

Sequence, based on SEQRES records: (download)

>d2ga9a1 c.66.1.25 (A:1-297) Polymerase regulatory subunit VP39 {Vaccinia virus [TaxId: 10245]}
mdvvsldkpfmyfeeidneldyepesanevakklpyqgqlklllgelfflsklqrhgild
gatvvyigsapgthirylrdhfynlgviikwmlidgrhhdpilnglrdvtlvtrfvdeey
lrsikkqlhpskiilisdvasaaggnepstadllsnyalqnvmisilnpvasslkwrcpf
pdqwikdfyiphgnkmlqpfapsysaemrllsiytgenmrltrvtksdavnyekkmyyln
kivrnkvvvnfdypnqeydyfhmyfmlrtvycnktfpttkakvlflqqsifrflnip

Sequence, based on observed residues (ATOM records): (download)

>d2ga9a1 c.66.1.25 (A:1-297) Polymerase regulatory subunit VP39 {Vaccinia virus [TaxId: 10245]}
mdvvsldkpfmyfeeidneldyepesklpyqgqlklllgelfflsklqrhgildgatvvy
igsapgthirylrdhfynlgviikwmlidgrhhdpilnglrdvtlvtrfvdeeylrsikk
qlhpskiilisdvasgnepstadllsnyalqnvmisilnpvasslkwrcpfpdqwikdfy
iphgnkmlqpfapsysaemrllsiytgenmrltrvtksdavnyekkmyylnkivrnkvvv
nfdypnqeydyfhmyfmlrtvycnktfpttkakvlflqqsifrflnip

SCOP Domain Coordinates for d2ga9a1:

Click to download the PDB-style file with coordinates for d2ga9a1.
(The format of our PDB-style files is described here.)

Timeline for d2ga9a1: