SCOPe 2.07: Domain d1yoxb2: 1yox B:4-237

Lineage for d1yoxb2 (1yox B:4-237)

1. Root: SCOPe 2.07

2. Class b: All beta proteins [48724] (178 folds)

3. Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
   one turn of helix is made by two pairs of antiparallel strands linked with short turns
   has appearance of a sandwich of distinct architecture and jelly-roll topology

4. Superfamily b.82.5: TRAP-like [51219] (2 families)
   shorter variant of double-helix; assembles in large ring-like structures containing from 9 to 11 domains

5. Family b.82.5.2: PA3696/SPS0176-like [101995] (2 proteins)
   duplication: there are three structural repeats per subunit; nine domains per ring-like trimer
   automatically mapped to Pfam PF01987

6. Protein Hypothetical protein PA3696 [141645] (1 species)

7. Species Pseudomonas aeruginosa [TaxId:287] [141646] (1 PDB entry)
   Uniprot Q9HXU4 5-244

8. Domain d1yoxb2: 1yox B:4-237 [123790]
   Other proteins in same PDB: d1yoxb3, d1yoxd3, d1yoxe3
   automated match to d1yoxa1

Details for d1yoxb2

PDB Entry: 1yox, 2.3 Å

PDB Description: structure of the conserved protein of unknown function pa3696 from pseudomonas aeruginosa

PDB Compounds: (B:) hypothetical protein PA3696

SCOPe Domain Sequences for d1yoxb2:

Sequence, based on SEQRES records:

>d1yoxb2 b.82.5.2 (B:4-237) Hypothetical protein PA3696 {Pseudomonas aeruginosa [TaxId: 287]}
heldyrilgesmqtveieldpgetviaeagamnymtgdirftarmgdgsdgsllgklwsa
gkrklggesvfmthftnegqgkqhvafaapypgsvvavdlddvggrlfcqkdsflcaayg
trvgiaftkrlgagffggegfilqklegdglvfvhaggtlirrqlngetlrvdtgclvaf
tdgidydvqlagglksmlfggeglllttlkgsgtvwlqslpfsrlagriydatf

Sequence, based on observed residues (ATOM records):

>d1yoxb2 b.82.5.2 (B:4-237) Hypothetical protein PA3696 {Pseudomonas aeruginosa [TaxId: 287]}
heldyrilgesmqtveieldpgetviaeagamnymtgdirftarmthftnegqgkqhvaf
aapypgsvvavdlddvggrlfcqkdsflcaaygtrvgiaftkrlgfilqklegdglvfvh
aggtlirrqlngetlrvdtgclvaftdgidydvqlaggggeglllttlkgsgtvwlqslp
fsrlagriydatf

Timeline for d1yoxb2:

• d1yoxb2 first appeared in SCOP 1.73, called d1yoxb1
  
• d1yoxb2 was called d1yoxb_ in SCOPe 2.06
  
• d1yoxb2 appears in the current release, SCOPe 2.08