PDB entry 7nhp

View 7nhp on RCSB PDB site
Description: Structure of PSII-I (PSII with Psb27, Psb28, and Psb34)
Class: photosynthesis
Keywords: Membrane Protein Biogenesis Assembly Factors Photosystem II, PHOTOSYNTHESIS
Deposited on 2021-02-11, released 2021-05-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-05-05, with a file datestamp of 2021-04-30.
Experiment type: EM
Resolution: 2.72 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: Photosystem II lipoprotein Psb27
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain '2':
    Compound: Photosystem II reaction center psb28 protein
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain '3':
    Compound: Tsl0063 protein
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'A':
    Compound: Photosystem II protein D1 1
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhpa_
  • Chain 'B':
    Compound: Photosystem II CP47 reaction center protein
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhpb_
  • Chain 'C':
    Compound: Photosystem II CP43 reaction center protein
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhpc_
  • Chain 'D':
    Compound: Photosystem II D2 protein
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhpd_
  • Chain 'E':
    Compound: Cytochrome b559 subunit alpha
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhpe_
  • Chain 'F':
    Compound: Cytochrome b559 subunit beta
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhpf_
  • Chain 'H':
    Compound: Photosystem II reaction center protein H
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhph_
  • Chain 'I':
    Compound: Photosystem II reaction center protein I
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhpi_
  • Chain 'K':
    Compound: Photosystem II reaction center protein K
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhpk_
  • Chain 'L':
    Compound: Photosystem II reaction center protein L
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhpl_
  • Chain 'M':
    Compound: Photosystem II reaction center protein M
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhpm_
  • Chain 'T':
    Compound: Photosystem II reaction center protein T
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhpt_
  • Chain 'X':
    Compound: Photosystem II reaction center X protein
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhpx_
  • Chain 'Z':
    Compound: Photosystem II reaction center protein Z
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhpz_
  • Chain 'y':
    Compound: Photosystem II reaction center protein ycf12
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MN, CL, PHO, CLA, BCR, LHG, LMG, FE, PL9, HEM

PDB Chain Sequences:

  • Chain '1':
    No sequence available.

  • Chain '2':
    No sequence available.

  • Chain '3':
    No sequence available.

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7nhpA (A:)
mtttlqrresanlwerfcnwvtstdnrlyvgwfgvimiptllaaticfviafiaappvdi
dgirepvsgsllygnniitgavvpssnaiglhfypiweaasldewlynggpyqliifhfl
lgascymgrqwelsyrlgmrpwicvaysaplasafavfliypigqgsfsdgmplgisgtf
nfmivfqaehnilmhpfhqlgvagvfggalfcamhgslvtsslirettetesanygykfg
qeeetynivaahgyfgrlifqyasfnnsrslhfflaawpvvgvwftalgistmafnlngf
nfnhsvidakgnvintwadiinranlgmevmhernahnfpldlasaesapvamiapsing

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhpA (A:)
sanlwerfcnwvtstdnrlyvgwfgvimiptllaaticfviafiaappvdidgirepvsg
sllygnniitgavvpssnaiglhfypiweaasldewlynggpyqliifhfllgascymgr
qwelsyrlgmrpwicvaysaplasafavfliypigqgsfsdgmplgisgtfnfmivfqae
hnilmhpfhqlgvagvfggalfcamhgslvtsslirettetesanygykfgqeeetyniv
aahgyfgrlifqyasfnnsrslhfflaawpvvgvwftalgistmafnlngfnfnhsvida
kgnvintwadiinranlgmevmhernahnfpldla

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7nhpB (B:)
mglpwyrvhtvlindpgrliaahlmhtalvagwagsmalyelatfdpsdpvlnpmwrqgm
fvlpfmarlgvtgswsgwsitgetgidpgfwsfegvalahivlsgllflaacwhwvywdl
elfrdprtgepaldlpkmfgihlflagllcfgfgafhltglfgpgmwvsdpygltgsvqp
vapewgpdgfnpynpggvvahhiaagivgiiaglfhilvrppqrlykalrmgnietvlss
siaavffaafvvagtmwygsattpielfgptryqwdssyfqqeinrrvqaslasgatlee
awsaipeklafydyignnpakgglfrtgpmnkgdgiaqawkghavfrnkegeelfvrrmp
affesfpviltdkngvvkadipfrraeskysfeqqgvtvsfyggelngqtftdpptvksy
arkaifgeifefdtetlnsdgifrtsprgwftfahavfallfffghiwhgartlfrdvfs
gidpelspeqvewgfyqkvgdvttrrkeav

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhpB (B:)
glpwyrvhtvlindpgrliaahlmhtalvagwagsmalyelatfdpsdpvlnpmwrqgmf
vlpfmarlgvtgswsgwsitgetgidpgfwsfegvalahivlsgllflaacwhwvywdle
lfrdprtgepaldlpkmfgihlflagllcfgfgafhltglfgpgmwvsdpygltgsvqpv
apewgpdgfnpynpggvvahhiaagivgiiaglfhilvrppqrlykalrmgnietvlsss
iaavffaafvvagtmwygsattpielfgptryqwdssyfqqeinrrvqaslasgatleea
wsaipeklafydyignnpakgglfrtgpmnkgdgiaqawkghavfrnkegeelfvrrmpa
ffesfpviltdkngvvkadipfrraeskysfeqqgvtvsfyggelngqtftdpptvksya
rkaifgeifefdtetlnsdgifrtsprgwftfahavfallfffghiwhgartlfrdvfsg
idpelspeqvewgfyq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7nhpC (C:)
mvtlssnsifatnrdqessgfawwagnarlinlsgkllgahvahaglivfwagamtlfel
ahfipekpmyeqgliliphiatlgwgvgpggevvdtfpffvvgvvhlissavlgfggvyh
airgpetleeyssffgydwkdknkmttilgfhlivlgigalllvakamffgglydtwapg
ggdvrvitnptldprvifgyllkspfggegwivsvnnledvvgghiwigliciaggiwhi
lttpfgwarrafiwsgeaylsyslgalsmmgfiatcfvwfnntvypsefygptgpeasqa
qamtflirdqklganvgsaqgptglgkylmrsptgeiifggetmrfwdfrgpwleplrgp
ngldlnkikndiqpwqerraaeymthaplgslnsvggvateinsvnfvsprswlatshfv
laffflvghlwhagraraaaagfekgidresepvlsmpsld

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhpC (C:)
rdqessgfawwagnarlinlsgkllgahvahaglivfwagamtlfelahfipekpmyeqg
liliphiatlgwgvgpggevvdtfpffvvgvvhlissavlgfggvyhairgpetleeyss
ffgydwkdknkmttilgfhlivlgigalllvakamffgglydtwapgggdvrvitnptld
prvifgyllkspfggegwivsvnnledvvgghiwigliciaggiwhilttpfgwarrafi
wsgeaylsyslgalsmmgfiatcfvwfnntvypsefygptgpeasqaqamtflirdqklg
anvgsaqgptglgkylmrsptgeiifggetmrfwdfrgpwleplrgpngldlnkikndiq
pwqerraaeymthaplgslnsvggvateinsvnfvsprswlatshfvlaffflvghlwha
graraaaagfek

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >7nhpD (D:)
mtiaigrapaergwfdilddwlkrdrfvfvgwsgillfpcaylalggwltgttfvtswyt
hglassylegcnfltvavstpansmghsllllwgpeaqgdftrwcqlgglwtfialhgaf
gligfmlrqfeiarlvgvrpynaiafsapiavfvsvfliyplgqsswffapsfgvaaifr
fllffqgfhnwtlnpfhmmgvagvlggallcaihgatventlfqdgegastfrafnptqa
eetysmvtanrfwsqifgiafsnkrwlhffmlfvpvtglwmsaigvvglalnlrsydfis
qeiraaedpefetfytknlllnegirawmapqdqphenfvfpeevlprgnal

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhpD (D:)
rgwfdilddwlkrdrfvfvgwsgillfpcaylalggwltgttfvtswythglassylegc
nfltvavstpansmghsllllwgpeaqgdftrwcqlgglwtfialhgafgligfmlrqfe
iarlvgvrpynaiafsapiavfvsvfliyplgqsswffapsfgvaaifrfllffqgfhnw
tlnpfhmmgvagvlggallcaihgatventlfqdgegastfrafnptqaeetysmvtanr
fwsqifgiafsnkrwlhffmlfvpvtglwmsaigvvglalnlrsydfisqeiraaedpef
etfytknlllnegirawmapqdqphenfvfpeevlprgnal

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >7nhpE (E:)
magttgerpfsdiitsvrywvihsitipalfiagwlfvstglaydvfgtprpdsyyaqeq
rsiplvtdrfeakqqvetfleqlk

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhpE (E:)
rpfsdiitsvrywvihsitipalfiagwlfvstglaydvfgtprpdsyyaqeqrsiplvt
drfeakqqvetfleqlk

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >7nhpF (F:)
mtsntpnqepvsypiftvrwvavhtlavptifflgaiaamqfiqr

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhpF (F:)
qepvsypiftvrwvavhtlavptifflgaiaamqfiqr

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >7nhpH (H:)
marrtwlgdilrplnseygkvapgwgttplmavfmglflvflliileiynstlildgvnv
swkalg

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhpH (H:)
arrtwlgdilrplnseygkvapgwgttplmavfmglflvflliileiynstlildgvnvs
wkalg

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >7nhpI (I:)
metlkitvyivvtffvllfvfgflsgdparnpkrkdle

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhpI (I:)
metlkitvyivvtffvllfvfgflsg

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >7nhpK (K:)
midalvlvaklpeayaifdplvdvlpvipvlflalafvwqaavgfr

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhpK (K:)
klpeayaifdplvdvlpvipvlflalafvwqaavgfr

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7nhpL (L:)
mepnpnrqpvelnrtslylglllilvlallfssyffn

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >7nhpM (M:)
mevnqlgliatalfvlvpsvfliilyvqtesqqkss

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhpM (M:)
mevnqlgliatalfvlvpsvfliilyvqtesqqk

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >7nhpT (T:)
metityvfifaciialfffaiffreppritkk

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhpT (T:)
metityvfifaciialfffaiffreppr

  • Chain 'X':
    Sequence, based on SEQRES records: (download) 
    >7nhpX (X:)
mtitpslkgffigllsgavvlgltfavliaisqidkvqrsl

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhpX (X:)
titpslkgffigllsgavvlgltfavliaisqidk

  • Chain 'Z':
    Sequence, based on SEQRES records: (download) 
    >7nhpZ (Z:)
mtilfqlalaalvilsfvmvigvpvayaspqdwdrskqliflgsglwialvlvvgvlnff
vv

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhpZ (Z:)
tilfqlalaalvilsfvmvigvpvayaspqdwdrskqliflgsglwialvlvvgvlnffv

  • Chain 'y':
    No sequence available.