PDB entry 7d6q
View 7d6q on RCSB PDB site
Description: Crystal structure of the Stx2a
Class: toxin
Keywords: Shiga toxin, TOXIN
Deposited on
2020-10-01, released
2021-04-14
The last revision prior to the SCOPe 2.07 freeze date was dated
2021-04-14, with a file datestamp of
2021-04-09.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.45
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: rRNA N-glycosylase
Species: Escherichia coli [TaxId:562]
Gene: STX2A
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d7d6qa_ - Chain 'B':
Compound: Shiga toxin 2 B subunit
Species: Escherichia coli [TaxId:562]
Gene: stxII, stx2B, stx2B_2, stx2dB, stx2vB, stxB2, vtx2B
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d7d6qb_ - Chain 'C':
Compound: Shiga toxin 2 B subunit
Species: Escherichia coli [TaxId:562]
Gene: stxII, stx2B, stx2B_2, stx2dB, stx2vB, stxB2, vtx2B
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d7d6qc_ - Chain 'D':
Compound: Shiga toxin 2 B subunit
Species: Escherichia coli [TaxId:562]
Gene: stxII, stx2B, stx2B_2, stx2dB, stx2vB, stxB2, vtx2B
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d7d6qd_ - Chain 'E':
Compound: Shiga toxin 2 B subunit
Species: Escherichia coli [TaxId:562]
Gene: stxII, stx2B, stx2B_2, stx2dB, stx2vB, stxB2, vtx2B
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d7d6qe_ - Chain 'F':
Compound: Shiga toxin 2 B subunit
Species: Escherichia coli [TaxId:562]
Gene: stxII, stx2B, stx2B_2, stx2dB, stx2vB, stxB2, vtx2B
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d7d6qf_ - Heterogens: 1PS, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>7d6qA (A:)
reftidfstqqsyvsslnsirteistplehisqgttsvsvinhtppgsyfavdirgldvy
qarfdhlrliieqnnlyvagfvntatntfyrfsdfthisvpgvttvsmttdssyttlqrv
aalersgmqisrhslvssylalmefsgntmtrdasravlrfvtvtaealrfrqiqrefrq
alsetapvytmtpgdvdltlnwgrisnvlpeyrgedgvrvgrisfnnisailgtvaviln
chhqgarsvravneesqpecqitgdrpvikinntlwesntaaaflnrksqflyttgk
Sequence, based on observed residues (ATOM records): (download)
>7d6qA (A:)
reftidfstqqsyvsslnsirteistplehisqgttsvsvinhtppgsyfavdirgldvy
qarfdhlrliieqnnlyvagfvntatntfyrfsdfthisvpgvttvsmttdssyttlqrv
aalersgmqisrhslvssylalmefsgntmtrdasravlrfvtvtaealrfrqiqrefrq
alsetapvytmtpgdvdltlnwgrisnvlpeyrgedgvrvgrisfnnisailgtvaviln
chqpecqitgdrpvikinntlwesntaaaflnrksqflyttgk
- Chain 'B':
Sequence, based on SEQRES records: (download)
>7d6qB (B:)
adcakgkiefskyneddtftvkvdgkeywtsrwnlqpllqsaqltgmtvtiksstcesgs
gfaevqfnnd
Sequence, based on observed residues (ATOM records): (download)
>7d6qB (B:)
adcakgkiefskyneddtftvkvdgkeywtsrwnlqpllqsaqltgmtvtiksstcsgfa
evqfnnd
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>7d6qC (C:)
adcakgkiefskyneddtftvkvdgkeywtsrwnlqpllqsaqltgmtvtiksstcesgs
gfaevqfnnd
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>7d6qD (D:)
adcakgkiefskyneddtftvkvdgkeywtsrwnlqpllqsaqltgmtvtiksstcesgs
gfaevqfnnd
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>7d6qE (E:)
adcakgkiefskyneddtftvkvdgkeywtsrwnlqpllqsaqltgmtvtiksstcesgs
gfaevqfnnd
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>7d6qF (F:)
adcakgkiefskyneddtftvkvdgkeywtsrwnlqpllqsaqltgmtvtiksstcesgs
gfaevqfnnd