PDB entry 6ymf

View 6ymf on RCSB PDB site
Description: Crystal structure of serine hydroxymethyltransferase from Aphanothece halophytica in the PLP-Serine external aldimine state
Class: transferase
Keywords: serine biosynthesis, glycine, plp, one-carbon metabolism, tetrahydrofolate, transferase
Deposited on 2020-04-08, released 2020-06-03
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-06-03, with a file datestamp of 2020-05-29.
Experiment type: XRAY
Resolution: 1.63 Å
R-factor: N/A
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: serine hydroxymethyltransferase
    Species: Aphanothece halophytica [TaxId:72020]
    Gene: glyrA, glyA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6ymfa_
  • Heterogens: PLS, GOL, 1PE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6ymfA (A:)
mgsshhhhhhssglvprgshmtqtnldfllqtdptisgmmqkelqrqrehleliasenft
spavmatqgsvltnkyaeglpkkryyggcefideieqvaidrakelfgaasanvqphsga
qanfavfltllkpgdkimgmdlshgghlthgspanvsgkwfeavhygvsqeteqldydhi
levarqerpkliicgysaypriinfekfraiadevgaylladiahiaglvasghhpnpvp
hcdvvtttthktlrgprggliltrdpelgkkfnksvfpgtqggplehviagkavafgeal
kpefkaysgqvianaqamaqqlqnrgfkivsggtdnhlmlvdlrsvnltgkqadqlvsdv
nitankntvpfdpespfvtsglrlgspamttrglgtedfaeianiiadrlqnpedeqvkq
acvqrvaalcerfplyphlnapvpama

    Sequence, based on observed residues (ATOM records): (download) 
    >6ymfA (A:)
qtnldfllqtdptisgmmqkelqrqrehleliasenftspavmatqgsvltnkyaeglpk
kryyggcefideieqvaidrakelfgaasanvqphsgaqanfavfltllkpgdkimgmdl
shgghlthgspanvsgkwfeavhygvsqeteqldydhilevarqerpkliicgysaypri
infekfraiadevgaylladiahiaglvasghhpnpvphcdvvtttthktlrgprgglil
trdpelgkkfnksvfpgtqggplehviagkavafgealkpefkaysgqvianaqamaqql
qnrgfkivsggtdnhlmlvdlrsvnltgkqadqlvsdvnitankntvpfdpespfvtsgl
rlgspamttrglgtedfaeianiiadrlqnpedeqvkqacvqrvaalcerfplyphln