PDB entry 6xw6

View 6xw6 on RCSB PDB site
Description: Crystal structure of murine norovirus P domain in complex with Nanobody NB-5853
Class: viral protein
Keywords: MNV, neutralizing nanobody, VHH, norovirus, VIRAL PROTEIN
Deposited on 2020-01-23, released 2020-04-22
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-04-22, with a file datestamp of 2020-04-17.
Experiment type: XRAY
Resolution: 1.96 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: capsid protein
    Species: Murine norovirus 1 [TaxId:223997]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q80J94 (1-End)
      • expression tag (0)
  • Chain 'B':
    Compound: capsid protein
    Species: Murine norovirus 1 [TaxId:223997]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q80J94 (1-End)
      • expression tag (0)
  • Chain 'C':
    Compound: Nanobody NB-5853
    Species: VICUGNA PACOS [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6XW6
    Domains in SCOPe 2.07: d6xw6c1, d6xw6c2, d6xw6c3
  • Chain 'D':
    Compound: Nanobody NB-5853
    Species: VICUGNA PACOS [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6XW6
    Domains in SCOPe 2.07: d6xw6d1, d6xw6d2, d6xw6d3
  • Heterogens: MG, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6xw6C (C:)
qvqlqesggglvqagdslrvscaasgrtissspmgwfrqapgkerefvaaisgnggntyy
ldsvkgrfttsrdnakntvylqlnnlkpedtaiyycaarsrfsamhlayrrlvdyddwgq
gtqvtvsshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6xw6C (C:)
vqlqesggglvqagdslrvscaasgrtissspmgwfrqapgkerefvaaisgnggntyyl
dsvkgrfttsrdnakntvylqlnnlkpedtaiyycaarsrfsamhlayrrlvdyddwgqg
tqvtvs

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6xw6D (D:)
qvqlqesggglvqagdslrvscaasgrtissspmgwfrqapgkerefvaaisgnggntyy
ldsvkgrfttsrdnakntvylqlnnlkpedtaiyycaarsrfsamhlayrrlvdyddwgq
gtqvtvsshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6xw6D (D:)
vqlqesggglvqagdslrvscaasgrtissspmgwfrqapgkerefvaaisgnggntyyl
dsvkgrfttsrdnakntvylqlnnlkpedtaiyycaarsrfsamhlayrrlvdyddwgqg
tqvtvs