PDB entry 6oor

View 6oor on RCSB PDB site
Description: Structure of 1B1 bound to mouse CD1d
Class: immune system
Keywords: antibody antigen complex, IMMUNE SYSTEM
Deposited on 2019-04-23, released 2019-07-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Antigen-presenting glycoprotein CD1d1
    Species: Mus musculus [TaxId:10090]
    Gene: Cd1d1, mCG_3074
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0R4J090 (Start-278)
      • engineered mutation (11)
    Domains in SCOPe 2.08: d6oora1, d6oora2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6oorb_
  • Chain 'H':
    Compound: Antibody 1B1 Heavy chain
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
    • PDB 6OOR
    Domains in SCOPe 2.08: d6oorh_
  • Chain 'L':
    Compound: Antibody 1B1 Light chain
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6oorl1, d6oorl2
  • Heterogens: NA, UNL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6oorA (A:)
seaqqknytfrslqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsn
qqweklqhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvaf
qgkyvvrfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagk
sdlekqekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpn
adetwylqatldveageeaglacrvkhsslggqdiilywhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6oorA (A:)
nytfrslqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqwekl
qhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvafqgkyvv
rfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlekq
ekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwy
lqatldveageeaglacrvkhsslggqdiilyw

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6oorB (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6oorH (H:)
eaqlvesggvlvqpgrslklscaasgfpfnnydmawvrqaptkglewvasirtgdigtyy
rdsvkgrftvsrdnakstlylqmdslrsedtatyycvrprsvyyglllrpywffdfwgpg
tmvtvssaqttapsvyplapgcgdttsstvtlgclvkgyfpepvtvtwnsgalssdvhtf
pavlqsglytltssvtsstwpsqtvtcnvahpasstkvdkavearngshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6oorH (H:)
aqlvesggvlvqpgrslklscaasgfpfnnydmawvrqaptkglewvasirtgdigtyyr
dsvkgrftvsrdnakstlylqmdslrsedtatyycvrprsvyyglllrpywffdfwgpgt
mvtvssaqttapsvyplapgctsstvtlgclvkgyfpepvtvtwnsgasdvhtfpavlqs
glytltssvtsstwpsqtvtcnvahpasstkvdkav

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6oorL (L:)
qimltqqaeslwispgervsitcrasqsllytdgkhylswyqqrpgqttkaliyhasvrt
dgvptrfigsgsgseftlsiehvqpedfaiyyclqtlkspytfgagtklelkradaaptv
sifppsteqlatggasvvclmnnfyprdisvkwkidgterrdgvldsvtdqdskdstysm
sstlsltkadyeshnlytcevvhktssspvvksfnrnec