PDB entry 6d33

View 6d33 on RCSB PDB site
Description: Crystal structure of BH1352 2-deoxyribose-5-phosphate from Bacillus halodurans
Class: transferase
Keywords: aldolase, TIM barrel, 2-deoxyribose-5-phosphate, DRP, TRANSFERASE
Deposited on 2018-04-14, released 2019-10-16
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-10-16, with a file datestamp of 2019-10-11.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: deoxyribose-phosphate aldolase
    Species: Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) [TaxId:272558]
    Gene: deoC, dra, BH1352
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6d33a_
  • Chain 'B':
    Compound: deoxyribose-phosphate aldolase
    Species: Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) [TaxId:272558]
    Gene: deoC, dra, BH1352
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6d33b_
  • Chain 'C':
    Compound: deoxyribose-phosphate aldolase
    Species: Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) [TaxId:272558]
    Gene: deoC, dra, BH1352
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6d33c_
  • Chain 'D':
    Compound: deoxyribose-phosphate aldolase
    Species: Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) [TaxId:272558]
    Gene: deoC, dra, BH1352
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6d33d_
  • Chain 'E':
    Compound: deoxyribose-phosphate aldolase
    Species: Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) [TaxId:272558]
    Gene: deoC, dra, BH1352
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6d33e_
  • Chain 'F':
    Compound: deoxyribose-phosphate aldolase
    Species: Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) [TaxId:272558]
    Gene: deoC, dra, BH1352
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6d33f_
  • Heterogens: GOL, TRS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6d33A (A:)
msrsiaqmidhtllkpnttedqivklceeakeysfasvcvnptwvalaaqllkdapdvkv
ctvigfplgattpevkafettnaiengatevdmvinigalkdkqyelvgrdiqavvkaae
gkaltkviietsllteeekkaacelavkagadfvktstgfsgggataedialmrkvvgpn
lgvkasggvrdlsdakamidagatrigasagvaivngersegsy

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6d33B (B:)
msrsiaqmidhtllkpnttedqivklceeakeysfasvcvnptwvalaaqllkdapdvkv
ctvigfplgattpevkafettnaiengatevdmvinigalkdkqyelvgrdiqavvkaae
gkaltkviietsllteeekkaacelavkagadfvktstgfsgggataedialmrkvvgpn
lgvkasggvrdlsdakamidagatrigasagvaivngersegsy

    Sequence, based on observed residues (ATOM records): (download) 
    >6d33B (B:)
siaqmidhtllkpnttedqivklceeakeysfasvcvnptwvalaaqllkdapdvkvctv
igfplgattpevkafettnaiengatevdmvinigalkdkqyelvgrdiqavvkaaegka
ltkviietsllteeekkaacelavkagadfvktstgfsgggataedialmrkvvgpnlgv
kasggvrdlsdakamidagatrigasagvaivnger

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6d33C (C:)
msrsiaqmidhtllkpnttedqivklceeakeysfasvcvnptwvalaaqllkdapdvkv
ctvigfplgattpevkafettnaiengatevdmvinigalkdkqyelvgrdiqavvkaae
gkaltkviietsllteeekkaacelavkagadfvktstgfsgggataedialmrkvvgpn
lgvkasggvrdlsdakamidagatrigasagvaivngersegsy

    Sequence, based on observed residues (ATOM records): (download) 
    >6d33C (C:)
siaqmidhtllkpnttedqivklceeakeysfasvcvnptwvalaaqllkdapdvkvctv
igfplgattpevkafettnaiengatevdmvinigalkdkqyelvgrdiqavvkaaegka
ltkviietsllteeekkaacelavkagadfvktstgfsgggataedialmrkvvgpnlgv
kasggvrdlsdakamidagatrigasagvaivn

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6d33D (D:)
msrsiaqmidhtllkpnttedqivklceeakeysfasvcvnptwvalaaqllkdapdvkv
ctvigfplgattpevkafettnaiengatevdmvinigalkdkqyelvgrdiqavvkaae
gkaltkviietsllteeekkaacelavkagadfvktstgfsgggataedialmrkvvgpn
lgvkasggvrdlsdakamidagatrigasagvaivngersegsy

    Sequence, based on observed residues (ATOM records): (download) 
    >6d33D (D:)
msrsiaqmidhtllkpnttedqivklceeakeysfasvcvnptwvalaaqllkdapdvkv
ctvigfplgattpevkafettnaiengatevdmvinigalkdkqyelvgrdiqavvkaae
gkaltkviietsllteeekkaacelavkagadfvktstgfsgggataedialmrkvvgpn
lgvkasggvrdlsdakamidagatrigasagvaivn

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6d33E (E:)
msrsiaqmidhtllkpnttedqivklceeakeysfasvcvnptwvalaaqllkdapdvkv
ctvigfplgattpevkafettnaiengatevdmvinigalkdkqyelvgrdiqavvkaae
gkaltkviietsllteeekkaacelavkagadfvktstgfsgggataedialmrkvvgpn
lgvkasggvrdlsdakamidagatrigasagvaivngersegsy

    Sequence, based on observed residues (ATOM records): (download) 
    >6d33E (E:)
rsiaqmidhtllkpnttedqivklceeakeysfasvcvnptwvalaaqllkdapdvkvct
vigfplgattpevkafettnaiengatevdmvinigalkdkqyelvgrdiqavvkaaegk
altkviietsllteeekkaacelavkagadfvktstgfsgggataedialmrkvvgpnlg
vkasggvrdlsdakamidagatrigasagvaivnger

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6d33F (F:)
msrsiaqmidhtllkpnttedqivklceeakeysfasvcvnptwvalaaqllkdapdvkv
ctvigfplgattpevkafettnaiengatevdmvinigalkdkqyelvgrdiqavvkaae
gkaltkviietsllteeekkaacelavkagadfvktstgfsgggataedialmrkvvgpn
lgvkasggvrdlsdakamidagatrigasagvaivngersegsy

    Sequence, based on observed residues (ATOM records): (download) 
    >6d33F (F:)
siaqmidhtllkpnttedqivklceeakeysfasvcvnptwvalaaqllkdapdvkvctv
igfplgattpevkafettnaiengatevdmvinigalkdkqyelvgrdiqavvkaaegka
ltkviietsllteeekkaacelavkagadfvktstgfsgggataedialmrkvvgpnlgv
kasggvrdlsdakamidagatrigasagvaivngersegsy