PDB entry 6cty

View 6cty on RCSB PDB site
Description: Crystal structure of dihydroorotase pyrC from Yersinia pestis in complex with zinc and malate at 2.4 A resolution
Class: hydrolase
Keywords: Structural Genomics, dihydroorotase, zinc, CSGID, Center for Structural Genomics of Infectious Diseases, HYDROLASE
Deposited on 2018-03-23, released 2018-04-04
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-04-04, with a file datestamp of 2018-03-29.
Experiment type: XRAY
Resolution: 2.41 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: dihydroorotase
    Species: Yersinia pestis [TaxId:632]
    Gene: pyrC, YPO1587, y1746, YP_2265
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6ctya_
  • Chain 'B':
    Compound: dihydroorotase
    Species: Yersinia pestis [TaxId:632]
    Gene: pyrC, YPO1587, y1746, YP_2265
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6ctyb_
  • Chain 'C':
    Compound: dihydroorotase
    Species: Yersinia pestis [TaxId:632]
    Gene: pyrC, YPO1587, y1746, YP_2265
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8ZFU4 (24-End)
      • expression tag (18-23)
    Domains in SCOPe 2.07: d6ctyc1, d6ctyc2
  • Chain 'D':
    Compound: dihydroorotase
    Species: Yersinia pestis [TaxId:632]
    Gene: pyrC, YPO1587, y1746, YP_2265
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6ctyd_
  • Chain 'E':
    Compound: dihydroorotase
    Species: Yersinia pestis [TaxId:632]
    Gene: pyrC, YPO1587, y1746, YP_2265
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6ctye_
  • Chain 'F':
    Compound: dihydroorotase
    Species: Yersinia pestis [TaxId:632]
    Gene: pyrC, YPO1587, y1746, YP_2265
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6ctyf_
  • Heterogens: ZN, MLT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6ctyA (A:)
mhhhhhhssgvdlgtenlyfqsnamtaqpqtlkirrpddwhihlrddemlstvlpytsev
faraivmpnlaqpittvasaiayrerilaavpaghkftplmtcyltnsldakelttgfeq
gvftaaklypanattnsthgvsdipaiyplfeqmqkigmpllihgevtdaavdifdrear
fidqilepirqkfpelkivfehittkdaadyvlagnrflgatvtpqhlmfnrnhmlvggi
rphlfclpilkrsthqqalraavasgsdrfflgtdsaphakhrkesscgcagvfnapaal
payasvfeelnalqhleafcalngprfyglpvnddvvelvrtpflqpeeiplgnesvipf
lagqtlnwsvkr

    Sequence, based on observed residues (ATOM records): (download) 
    >6ctyA (A:)
qpqtlkirrpddwhihlrddemlstvlpytsevfaraivmpnlaqpittvasaiayreri
laavpaghkftplmtcyltnsldakelttgfeqgvftaaklypanattnsthgvsdipai
yplfeqmqkigmpllihgevtdaavdifdrearfidqilepirqkfpelkivfehittkd
aadyvlagnrflgatvtpqhlmfnrnhmlvggirphlfclpilkrsthqqalraavasgs
drfflgtdsaphakhrkesscgcagvfnapaalpayasvfeelnalqhleafcalngprf
yglpvnddvvelvrtpflqpeeiplgnesvipflagqtlnwsvkr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6ctyB (B:)
mhhhhhhssgvdlgtenlyfqsnamtaqpqtlkirrpddwhihlrddemlstvlpytsev
faraivmpnlaqpittvasaiayrerilaavpaghkftplmtcyltnsldakelttgfeq
gvftaaklypanattnsthgvsdipaiyplfeqmqkigmpllihgevtdaavdifdrear
fidqilepirqkfpelkivfehittkdaadyvlagnrflgatvtpqhlmfnrnhmlvggi
rphlfclpilkrsthqqalraavasgsdrfflgtdsaphakhrkesscgcagvfnapaal
payasvfeelnalqhleafcalngprfyglpvnddvvelvrtpflqpeeiplgnesvipf
lagqtlnwsvkr

    Sequence, based on observed residues (ATOM records): (download) 
    >6ctyB (B:)
pqtlkirrpddwhihlrddemlstvlpytsevfaraivmpnlaqpittvasaiayreril
aavpaghkftplmtcyltnsldakelttgfeqgvftaaklypanattnsthgvsdipaiy
plfeqmqkigmpllihgevtdaavdifdrearfidqilepirqkfpelkivfehittkda
adyvlagnrflgatvtpqhlmfnrnhmlvggirphlfclpilkrsthqqalraavasgsd
rfflgtdsaphakhrkesscgcagvfnapaalpayasvfeelnalqhleafcalngprfy
glpvnddvvelvrtpflqpeeiplgnesvipflagqtlnwsvk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6ctyC (C:)
mhhhhhhssgvdlgtenlyfqsnamtaqpqtlkirrpddwhihlrddemlstvlpytsev
faraivmpnlaqpittvasaiayrerilaavpaghkftplmtcyltnsldakelttgfeq
gvftaaklypanattnsthgvsdipaiyplfeqmqkigmpllihgevtdaavdifdrear
fidqilepirqkfpelkivfehittkdaadyvlagnrflgatvtpqhlmfnrnhmlvggi
rphlfclpilkrsthqqalraavasgsdrfflgtdsaphakhrkesscgcagvfnapaal
payasvfeelnalqhleafcalngprfyglpvnddvvelvrtpflqpeeiplgnesvipf
lagqtlnwsvkr

    Sequence, based on observed residues (ATOM records): (download) 
    >6ctyC (C:)
yfqsnamtaqpqtlkirrpddwhihlrddemlstvlpytsevfaraivmpnlaqpittva
saiayrerilaavpaghkftplmtcyltnsldakelttgfeqgvftaaklypanattnst
hgvsdipaiyplfeqmqkigmpllihgevtdaavdifdrearfidqilepirqkfpelki
vfehittkdaadyvlagnrflgatvtpqhlmfnrnhmlvggirphlfclpilkrsthqqa
lraavasgsdrfflgtdsaphakhrkesscgcagvfnapaalpayasvfeelnalqhlea
fcalngprfyglpvnddvvelvrtpflqpeeiplgnesvipflagqtlnwsvk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6ctyD (D:)
mhhhhhhssgvdlgtenlyfqsnamtaqpqtlkirrpddwhihlrddemlstvlpytsev
faraivmpnlaqpittvasaiayrerilaavpaghkftplmtcyltnsldakelttgfeq
gvftaaklypanattnsthgvsdipaiyplfeqmqkigmpllihgevtdaavdifdrear
fidqilepirqkfpelkivfehittkdaadyvlagnrflgatvtpqhlmfnrnhmlvggi
rphlfclpilkrsthqqalraavasgsdrfflgtdsaphakhrkesscgcagvfnapaal
payasvfeelnalqhleafcalngprfyglpvnddvvelvrtpflqpeeiplgnesvipf
lagqtlnwsvkr

    Sequence, based on observed residues (ATOM records): (download) 
    >6ctyD (D:)
pqtlkirrpddwhihlrddemlstvlpytsevfaraivmpnlaqpittvasaiayreril
aavpaghkftplmtcyltnsldakelttgfeqgvftaaklypanattnsthgvsdipaiy
plfeqmqkigmpllihgevtdaavdifdrearfidqilepirqkfpelkivfehittkda
adyvlagnrflgatvtpqhlmfnrnhmlvggirphlfclpilkrsthqqalraavasgsd
rfflgtdsaphakhrkesscgcagvfnapaalpayasvfeelnalqhleafcalngprfy
glpvnddvvelvrtpflqpeeiplgnesvipflagqtlnwsvk

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6ctyE (E:)
mhhhhhhssgvdlgtenlyfqsnamtaqpqtlkirrpddwhihlrddemlstvlpytsev
faraivmpnlaqpittvasaiayrerilaavpaghkftplmtcyltnsldakelttgfeq
gvftaaklypanattnsthgvsdipaiyplfeqmqkigmpllihgevtdaavdifdrear
fidqilepirqkfpelkivfehittkdaadyvlagnrflgatvtpqhlmfnrnhmlvggi
rphlfclpilkrsthqqalraavasgsdrfflgtdsaphakhrkesscgcagvfnapaal
payasvfeelnalqhleafcalngprfyglpvnddvvelvrtpflqpeeiplgnesvipf
lagqtlnwsvkr

    Sequence, based on observed residues (ATOM records): (download) 
    >6ctyE (E:)
pqtlkirrpddwhihlrddemlstvlpytsevfaraivmpnlaqpittvasaiayreril
aavpaghkftplmtcyltnsldakelttgfeqgvftaaklypannsthgvsdipaiyplf
eqmqkigmpllihgevtdaavdifdrearfidqilepirqkfpelkivfehittkdaady
vlagnrflgatvtpqhlmfnrnhmlvggirphlfclpilkrsthqqalraavasgsdrff
lgtdsaphakhrkesscgcagvfnapaalpayasvfeelnalqhleafcalngprfyglp
vnddvvelvrtpflqpeeiplgnesvipflagqtlnwsvkr

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6ctyF (F:)
mhhhhhhssgvdlgtenlyfqsnamtaqpqtlkirrpddwhihlrddemlstvlpytsev
faraivmpnlaqpittvasaiayrerilaavpaghkftplmtcyltnsldakelttgfeq
gvftaaklypanattnsthgvsdipaiyplfeqmqkigmpllihgevtdaavdifdrear
fidqilepirqkfpelkivfehittkdaadyvlagnrflgatvtpqhlmfnrnhmlvggi
rphlfclpilkrsthqqalraavasgsdrfflgtdsaphakhrkesscgcagvfnapaal
payasvfeelnalqhleafcalngprfyglpvnddvvelvrtpflqpeeiplgnesvipf
lagqtlnwsvkr

    Sequence, based on observed residues (ATOM records): (download) 
    >6ctyF (F:)
pqtlkirrpddwhihlrddemlstvlpytsevfaraivmpnlaqpittvasaiayreril
aavpaghkftplmtcyltnsldakelttgfeqgvftaaklypanattnsthgvsdipaiy
plfeqmqkigmpllihgevtdaavdifdrearfidqilepirqkfpelkivfehittkda
adyvlagnrflgatvtpqhlmfnrnhmlvggirphlfclpilkrsthqqalraavasgsd
rfflgtdsaphakhrkesscgcagvfnapaalpayasvfeelnalqhleafcalngprfy
glpvnddvvelvrtpflqpeeiplgnesvipflagqtlnwsvkr