PDB entry 6bmh

View 6bmh on RCSB PDB site
Description: Crystal structure of MHC-I like protein
Class: immune system
Keywords: Major Histocompatibility complex, MHC-I, CD1d, antigen, IMMUNE SYSTEM
Deposited on 2017-11-14, released 2018-01-31
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-03-07, with a file datestamp of 2018-03-02.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Antigen-presenting glycoprotein CD1d2
    Species: Mus musculus [TaxId:10090]
    Gene: Cd1d2, Cd1.2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11610 (Start-275)
      • conflict (42)
    Domains in SCOPe 2.07: d6bmha1, d6bmha2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6bmhb_
  • Chain 'C':
    Compound: Antigen-presenting glycoprotein CD1d2
    Species: Mus musculus [TaxId:10090]
    Gene: Cd1d2, Cd1.2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11610 (Start-275)
      • conflict (42)
    Domains in SCOPe 2.07: d6bmhc1, d6bmhc2
  • Chain 'D':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6bmhd_
  • Chain 'E':
    Compound: Antigen-presenting glycoprotein CD1d2
    Species: Mus musculus [TaxId:10090]
    Gene: Cd1d2, Cd1.2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11610 (Start-275)
      • conflict (42)
    Domains in SCOPe 2.07: d6bmhe1, d6bmhe2
  • Chain 'F':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6bmhf_
  • Chain 'G':
    Compound: Antigen-presenting glycoprotein CD1d2
    Species: Mus musculus [TaxId:10090]
    Gene: Cd1d2, Cd1.2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11610 (Start-275)
      • conflict (42)
    Domains in SCOPe 2.07: d6bmhg1, d6bmhg2
  • Chain 'H':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6bmhh_
  • Heterogens: F61, NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6bmhA (A:)
qqknytfrclqtssfaniswsrtdslillgdlqthrwsndsaiisftkpwsqgklsnqqw
eklqhmfqvyrvsftrdiqelvkmmspkedypieiqlstgcemypgnasesffhvafqgk
yavrfrgtswqrvlgapswldlpikvlnadqgtsatvqtllndtwpqfarglleagksdl
ekqekpvawlssvpssahghlqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnade
twylqatldveageeaglacrvkhsslggqdiilyw

    Sequence, based on observed residues (ATOM records): (download) 
    >6bmhA (A:)
nytfrclqtssfaniswsrtdslillgdlqthrwsndsaiisftkpwsqgklsnqqwekl
qhmfqvyrvsftrdiqelvkmmspkedypieiqlstgcemypgnasesffhvafqgkyav
rfrgtswqrvlgapswldlpikvlnadqgtsatvqtllndtwpqfarglleagksdlekq
ekpvawlssvpssahghlqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwy
lqatldveageeaglacrvkhsslggqdiilyw

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6bmhB (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm

    Sequence, based on observed residues (ATOM records): (download) 
    >6bmhB (B:)
qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
fyilahteftptetdtyacrvkhasmaepktvywdrdm

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6bmhC (C:)
qqknytfrclqtssfaniswsrtdslillgdlqthrwsndsaiisftkpwsqgklsnqqw
eklqhmfqvyrvsftrdiqelvkmmspkedypieiqlstgcemypgnasesffhvafqgk
yavrfrgtswqrvlgapswldlpikvlnadqgtsatvqtllndtwpqfarglleagksdl
ekqekpvawlssvpssahghlqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnade
twylqatldveageeaglacrvkhsslggqdiilyw

    Sequence, based on observed residues (ATOM records): (download) 
    >6bmhC (C:)
nytfrclqtssfaniswsrtdslillgdlqthrwsndsaiisftkpwsqgklsnqqwekl
qhmfqvyrvsftrdiqelvkmmspkedypieiqlstgcemypgnasesffhvafqgkyav
rfrgtswqrvlgapswldlpikvlnadqgtsatvqtllndtwpqfarglleagksdlekq
ekpvawlssvpssahghlqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwy
lqatldveageeaglacrvkhsslggqdiilyw

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6bmhD (D:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm

    Sequence, based on observed residues (ATOM records): (download) 
    >6bmhD (D:)
qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
fyilahteftptetdtyacrvkhasmaepktvywdrdm

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6bmhE (E:)
qqknytfrclqtssfaniswsrtdslillgdlqthrwsndsaiisftkpwsqgklsnqqw
eklqhmfqvyrvsftrdiqelvkmmspkedypieiqlstgcemypgnasesffhvafqgk
yavrfrgtswqrvlgapswldlpikvlnadqgtsatvqtllndtwpqfarglleagksdl
ekqekpvawlssvpssahghlqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnade
twylqatldveageeaglacrvkhsslggqdiilyw

    Sequence, based on observed residues (ATOM records): (download) 
    >6bmhE (E:)
nytfrclqtssfaniswsrtdslillgdlqthrwsndsaiisftkpwsqgklsnqqwekl
qhmfqvyrvsftrdiqelvkmmspkedypieiqlstgcemypgnasesffhvafqgkyav
rfrgtswqrvlgapswldlpikvlnadqgtsatvqtllndtwpqfarglleagksdlekq
ekpvawlssvpssahghlqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwy
lqatldveageeaglacrvkhsslggqdiilyw

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6bmhF (F:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm

    Sequence, based on observed residues (ATOM records): (download) 
    >6bmhF (F:)
qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
fyilahteftptetdtyacrvkhasmaepktvywdrdm

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >6bmhG (G:)
qqknytfrclqtssfaniswsrtdslillgdlqthrwsndsaiisftkpwsqgklsnqqw
eklqhmfqvyrvsftrdiqelvkmmspkedypieiqlstgcemypgnasesffhvafqgk
yavrfrgtswqrvlgapswldlpikvlnadqgtsatvqtllndtwpqfarglleagksdl
ekqekpvawlssvpssahghlqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnade
twylqatldveageeaglacrvkhsslggqdiilyw

    Sequence, based on observed residues (ATOM records): (download) 
    >6bmhG (G:)
nytfrclqtssfaniswsrtdslillgdlqthrwsndsaiisftkpwsqgklsnqqwekl
qhmfqvyrvsftrdiqelvkmmspkedypieiqlstgcemypgnasesffhvafqgkyav
rfrgtswqrvlgapswldlpikvlnadqgtsatvqtllndtwpqfarglleagksdlekq
ekpvawlssvpssahghlqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwy
lqatldveageeaglacrvkhsslggqdiilyw

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6bmhH (H:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm

    Sequence, based on observed residues (ATOM records): (download) 
    >6bmhH (H:)
qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
fyilahteftptetdtyacrvkhasmaepktvywdrdm