PDB entry 5zy9

View 5zy9 on RCSB PDB site
Description: Structural basis for a tRNA synthetase
Class: ligase
Keywords: tRNA, tRNA synthetase, LIGASE
Deposited on 2018-05-23, released 2019-06-12
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-06-12, with a file datestamp of 2019-06-07.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'C':
    Compound: Threonyl-tRNA synthase
    Species: Phytophthora sojae [TaxId:67593]
    Database cross-references and differences (RAF-indexed):
    • Uniprot G3FIN0 (1-399)
      • initiating methionine (0)
    Domains in SCOPe 2.07: d5zy9c1, d5zy9c2
  • Chain 'D':
    Compound: Threonyl-tRNA synthase
    Species: Phytophthora sojae [TaxId:67593]
    Database cross-references and differences (RAF-indexed):
    • Uniprot G3FIN0 (1-399)
      • initiating methionine (0)
    Domains in SCOPe 2.07: d5zy9d1, d5zy9d2
  • Chain 'E':
    Compound: Threonyl-tRNA synthase
    Species: Phytophthora sojae [TaxId:67593]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5zy9e1, d5zy9e2
  • Heterogens: 2CR, ZN, HOH

PDB Chain Sequences:

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5zy9C (C:)
mdhrrlgvseelfffhslspgsgfwlphgsaiyfkllkfireqyrargytevitpnifnm
elwnisghakhykenmfvfdvegqeyalkpmncpaaslmfdfrqrsyrelpiryadcgvl
hrnelsgaltgltrvrrfqqddahifcrddqikkevldflsfmkyvydvfgiefnlelst
rpekamgeleqweraesqlaealdefvgagkwvvnpgdgafygpkidimitdalkrqhqc
atvqldfqlpirfnlkyrtddadnfkrpviihraiygslerfvavlvehyagkfpfwlsp
rqvlivtvgaafvdygyevkdamfragfdvdiddtgktlnkkiregqmahynfilvvgah
eketrsvnirtrdnkvtgtktleeaiamfkeleetkaadehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5zy9C (C:)
mdhrrlgvseelfffhslspgsgfwlphgsaiyfkllkfireqyrargytevitpnifnm
elwnisghakhykenmfvfdvegqeyalkpmncpaaslmfdfrqrsyrelpiryadcgvl
hrnelsgaltgltrvrrfqqddahifcrddqikkevldflsfmkyvydvfgiefnlelst
rpekamgeleqweraesqlaealdefvgagkwvvnpgdgafygpkidimitdalkrqhqc
atvqldfqlpirfnlkyrtddadnfkrpviihraiygslerfvavlvehyagkfpfwlsp
rqvlivtvgaafvdygyevkdamfragfdvdiddtgktlnkkiregqmahynfilvvgah
eketrsvnirtrdnkvtgtktleeaiamfkeleetkaade

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5zy9D (D:)
mdhrrlgvseelfffhslspgsgfwlphgsaiyfkllkfireqyrargytevitpnifnm
elwnisghakhykenmfvfdvegqeyalkpmncpaaslmfdfrqrsyrelpiryadcgvl
hrnelsgaltgltrvrrfqqddahifcrddqikkevldflsfmkyvydvfgiefnlelst
rpekamgeleqweraesqlaealdefvgagkwvvnpgdgafygpkidimitdalkrqhqc
atvqldfqlpirfnlkyrtddadnfkrpviihraiygslerfvavlvehyagkfpfwlsp
rqvlivtvgaafvdygyevkdamfragfdvdiddtgktlnkkiregqmahynfilvvgah
eketrsvnirtrdnkvtgtktleeaiamfkeleetkaadehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5zy9D (D:)
mdhrrlgvseelfffhslspgsgfwlphgsaiyfkllkfireqyrargytevitpnifnm
elwnisghakhykenmfvfdvegqeyalkpmncpaaslmfdfrqrsyrelpiryadcgvl
hrnelsgaltgltrvrrfqqddahifcrddqikkevldflsfmkyvydvfgiefnlelst
rpekamgeleqweraesqlaealdefvgagkwvvnpgdgafygpkidimitdalkrqhqc
atvqldfqlpirfnlkyrtddadnfkrpviihraiygslerfvavlvehyagkfpfwlsp
rqvlivtvgaafvdygyevkdamfragfdvdiddtgktlnkkiregqmahynfilvvgah
eketrsvnirtrdnkvtgtktleeaiamfkeleetkaade

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5zy9E (E:)
mdhrrlgvseelfffhslspgsgfwlphgsaiyfkllkfireqyrargytevitpnifnm
elwnisghakhykenmfvfdvegqeyalkpmncpaaslmfdfrqrsyrelpiryadcgvl
hrnelsgaltgltrvrrfqqddahifcrddqikkevldflsfmkyvydvfgiefnlelst
rpekamgeleqweraesqlaealdefvgagkwvvnpgdgafygpkidimitdalkrqhqc
atvqldfqlpirfnlkyrtddadnfkrpviihraiygslerfvavlvehyagkfpfwlsp
rqvlivtvgaafvdygyevkdamfragfdvdiddtgktlnkkiregqmahynfilvvgah
eketrsvnirtrdnkvtgtktleeaiamfkeleetkaadehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5zy9E (E:)
hrrlgvseelfffhslspgsgfwlphgsaiyfkllkfireqyrargytevitpnifnmel
wnisghakhykenmfvfdvegqeyalkpmncpaaslmfdfrqrsyrelpiryadcgvlhr
nelsgaltgltrvrrfqqddahifcrddqikkevldflsfmkyvydvfgiefnlelstrp
ekamgeleqweraesqlaealdefvgagkwvvnpgdgafygpkidimitdalkrqhqcat
vqldfqlpirfnlkyrtddadnfkrpviihraiygslerfvavlvehyagkfpfwlsprq
vlivtvgaafvdygyevkdamfragfdvdiddtgktlnkkiregqmahynfilvvgahek
etrsvnirtrdnkvtgtktleeaiamfkeleetkaade