PDB entry 5yl5

View 5yl5 on RCSB PDB site
Description: Crystal structure of dodecameric Dehydroquinate dehydratase from Acinetobacter baumannii at 1.9A resolution
Class: lyase
Keywords: lyase
Deposited on 2017-10-17, released 2017-11-01
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-01, with a file datestamp of 2017-10-27.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5yl5a_
  • Chain 'B':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5yl5b_
  • Chain 'C':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5yl5c_
  • Chain 'D':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5yl5d_
  • Chain 'E':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5yl5e_
  • Chain 'F':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5yl5f_
  • Chain 'G':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5yl5g_
  • Chain 'H':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5yl5h_
  • Chain 'I':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5yl5i_
  • Chain 'J':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5yl5j_
  • Chain 'K':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5yl5k_
  • Chain 'L':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5yl5l_
  • Heterogens: SO4, GOL, TRS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5yl5A (A:)
msstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivd
rihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsd
kaigvicglgakgysfaldyaiekiqpsnpn

    Sequence, based on observed residues (ATOM records): (download) 
    >5yl5A (A:)
stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
igvicglgakgysfaldyaiekiqp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5yl5B (B:)
msstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivd
rihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsd
kaigvicglgakgysfaldyaiekiqpsnpn

    Sequence, based on observed residues (ATOM records): (download) 
    >5yl5B (B:)
stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
igvicglgakgysfaldyaiekiqp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5yl5C (C:)
msstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivd
rihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsd
kaigvicglgakgysfaldyaiekiqpsnpn

    Sequence, based on observed residues (ATOM records): (download) 
    >5yl5C (C:)
stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
igvicglgakgysfaldyaiekiqp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5yl5D (D:)
msstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivd
rihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsd
kaigvicglgakgysfaldyaiekiqpsnpn

    Sequence, based on observed residues (ATOM records): (download) 
    >5yl5D (D:)
stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
igvicglgakgysfaldyaiekiqp

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5yl5E (E:)
msstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivd
rihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsd
kaigvicglgakgysfaldyaiekiqpsnpn

    Sequence, based on observed residues (ATOM records): (download) 
    >5yl5E (E:)
stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
igvicglgakgysfaldyaiekiqp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5yl5F (F:)
msstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivd
rihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsd
kaigvicglgakgysfaldyaiekiqpsnpn

    Sequence, based on observed residues (ATOM records): (download) 
    >5yl5F (F:)
stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
igvicglgakgysfaldyaiekiqp

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5yl5G (G:)
msstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivd
rihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsd
kaigvicglgakgysfaldyaiekiqpsnpn

    Sequence, based on observed residues (ATOM records): (download) 
    >5yl5G (G:)
stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
igvicglgakgysfaldyaiekiqp

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5yl5H (H:)
msstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivd
rihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsd
kaigvicglgakgysfaldyaiekiqpsnpn

    Sequence, based on observed residues (ATOM records): (download) 
    >5yl5H (H:)
stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
igvicglgakgysfaldyaiekiqp

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >5yl5I (I:)
msstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivd
rihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsd
kaigvicglgakgysfaldyaiekiqpsnpn

    Sequence, based on observed residues (ATOM records): (download) 
    >5yl5I (I:)
stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
igvicglgakgysfaldyaiekiqp

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >5yl5J (J:)
msstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivd
rihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsd
kaigvicglgakgysfaldyaiekiqpsnpn

    Sequence, based on observed residues (ATOM records): (download) 
    >5yl5J (J:)
stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
igvicglgakgysfaldyaiekiqp

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >5yl5K (K:)
msstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivd
rihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsd
kaigvicglgakgysfaldyaiekiqpsnpn

    Sequence, based on observed residues (ATOM records): (download) 
    >5yl5K (K:)
msstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivd
rihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsd
kaigvicglgakgysfaldyaiekiqp

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >5yl5L (L:)
msstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivd
rihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsd
kaigvicglgakgysfaldyaiekiqpsnpn

    Sequence, based on observed residues (ATOM records): (download) 
    >5yl5L (L:)
stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
igvicglgakgysfaldyaiekiqp