PDB entry 5xv5

View 5xv5 on RCSB PDB site
Description: Crystal structure of Rib7 mutant S88E from Methanosarcina mazei
Class: oxidoreductase
Keywords: Rib7, riboflavin biosynthesis, OXIDOREDUCTASE
Deposited on 2017-06-26, released 2018-07-04
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-07-04, with a file datestamp of 2018-06-29.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: conserved protein
    Species: Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) [TaxId:192952]
    Gene: MM_0826
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8PYN5 (12-239)
      • expression tag (8-11)
      • engineered mutation (99)
    Domains in SCOPe 2.07: d5xv5a1, d5xv5a2
  • Chain 'B':
    Compound: conserved protein
    Species: Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) [TaxId:192952]
    Gene: MM_0826
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8PYN5 (12-End)
      • engineered mutation (99)
    Domains in SCOPe 2.07: d5xv5b_
  • Chain 'C':
    Compound: conserved protein
    Species: Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) [TaxId:192952]
    Gene: MM_0826
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8PYN5
      • engineered mutation (99)
    Domains in SCOPe 2.07: d5xv5c_
  • Chain 'D':
    Compound: conserved protein
    Species: Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) [TaxId:192952]
    Gene: MM_0826
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8PYN5 (12-End)
      • expression tag (11)
      • engineered mutation (99)
    Domains in SCOPe 2.07: d5xv5d1, d5xv5d2
  • Chain 'E':
    Compound: conserved protein
    Species: Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) [TaxId:192952]
    Gene: MM_0826
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8PYN5
      • engineered mutation (99)
    Domains in SCOPe 2.07: d5xv5e_
  • Chain 'F':
    Compound: conserved protein
    Species: Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) [TaxId:192952]
    Gene: MM_0826
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8PYN5 (12-End)
      • engineered mutation (99)
    Domains in SCOPe 2.07: d5xv5f_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5xv5A (A:)
mrgshhhhhhgsmdrpfifinsamsadgklstkerkqvkisgkldfermdelrahadaim
vgigtvladdpsltvksperkaarkaagksenpvrvvvdesartplnadifkkgeglrii
avsnsapeekirmleekalviktgafrvdltelaaklkemginslmveggatlnwgmlsa
glvdevytfvgnliiggktaptftdgegftenellglelssaekiedgillkwkvkgkkn

    Sequence, based on observed residues (ATOM records): (download) 
    >5xv5A (A:)
hhgsmdrpfifinsamsadgklstkerkqvkisgkldfermdelrahadaimvgigtvla
ddpsltvksperkaarkaagksenpvrvvvdesartplnadifkkgeglriiavsnsape
ekirmleekalviktgafrvdltelaaklkemginslmveggatlnwgmlsaglvdevyt
fvgnliiggktaptftdgegftenellglelssaekiedgillkwkvkgkkn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5xv5B (B:)
mrgshhhhhhgsmdrpfifinsamsadgklstkerkqvkisgkldfermdelrahadaim
vgigtvladdpsltvksperkaarkaagksenpvrvvvdesartplnadifkkgeglrii
avsnsapeekirmleekalviktgafrvdltelaaklkemginslmveggatlnwgmlsa
glvdevytfvgnliiggktaptftdgegftenellglelssaekiedgillkwkvkgkkn

    Sequence, based on observed residues (ATOM records): (download) 
    >5xv5B (B:)
mdrpfifinsamsadgklstkerkqvkisgkldfermdelrahadaimvgigtvladdps
ltvksperkaarkaagksenpvrvvvdesartplnadifkkgeglriiavsnsapeekir
mleekalviktgafrvdltelaaklkemginslmveggatlnwgmlsaglvdevytfvgn
liiggktaptftdgegftenellglelssaekiedgillkwkvk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5xv5C (C:)
mrgshhhhhhgsmdrpfifinsamsadgklstkerkqvkisgkldfermdelrahadaim
vgigtvladdpsltvksperkaarkaagksenpvrvvvdesartplnadifkkgeglrii
avsnsapeekirmleekalviktgafrvdltelaaklkemginslmveggatlnwgmlsa
glvdevytfvgnliiggktaptftdgegftenellglelssaekiedgillkwkvkgkkn

    Sequence, based on observed residues (ATOM records): (download) 
    >5xv5C (C:)
rpfifinsamsadgklstkerkqvkisgkldfermdelrahadaimvgigtvladdpslt
vksperkaarkaagksenpvrvvvdesartplnadifkkgeglriiavsnsapeekirml
eekalviktgafrvdltelaaklkemginslmveggatlnwgmlsaglvdevytfvgnli
iggktaptftdgegftenellglelssaekiedgillkwkvk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5xv5D (D:)
mrgshhhhhhgsmdrpfifinsamsadgklstkerkqvkisgkldfermdelrahadaim
vgigtvladdpsltvksperkaarkaagksenpvrvvvdesartplnadifkkgeglrii
avsnsapeekirmleekalviktgafrvdltelaaklkemginslmveggatlnwgmlsa
glvdevytfvgnliiggktaptftdgegftenellglelssaekiedgillkwkvkgkkn

    Sequence, based on observed residues (ATOM records): (download) 
    >5xv5D (D:)
smdrpfifinsamsadgklstkerkqvkisgkldfermdelrahadaimvgigtvladdp
sltvksperkaarkaagksenpvrvvvdesartplnadifkkgeglriiavsnsapeeki
rmleekalviktgafrvdltelaaklkemginslmveggatlnwgmlsaglvdevytfvg
nliiggktaptftdgegftenellglelssaekiedgillkwkvkg

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5xv5E (E:)
mrgshhhhhhgsmdrpfifinsamsadgklstkerkqvkisgkldfermdelrahadaim
vgigtvladdpsltvksperkaarkaagksenpvrvvvdesartplnadifkkgeglrii
avsnsapeekirmleekalviktgafrvdltelaaklkemginslmveggatlnwgmlsa
glvdevytfvgnliiggktaptftdgegftenellglelssaekiedgillkwkvkgkkn

    Sequence, based on observed residues (ATOM records): (download) 
    >5xv5E (E:)
rpfifinsamsadgklstkerkqvkisgkldfermdelrahadaimvgigtvladdpslt
vksperkaarkaagksenpvrvvvdesartplnadifkkgeglriiavsnsapeekirml
eekalviktgafrvdltelaaklkemginslmveggatlnwgmlsaglvdevytfvgnli
iggktaptftdgegftenellglelssaekiedgillkwkvk

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5xv5F (F:)
mrgshhhhhhgsmdrpfifinsamsadgklstkerkqvkisgkldfermdelrahadaim
vgigtvladdpsltvksperkaarkaagksenpvrvvvdesartplnadifkkgeglrii
avsnsapeekirmleekalviktgafrvdltelaaklkemginslmveggatlnwgmlsa
glvdevytfvgnliiggktaptftdgegftenellglelssaekiedgillkwkvkgkkn

    Sequence, based on observed residues (ATOM records): (download) 
    >5xv5F (F:)
mdrpfifinsamsadgklstkerkqvkisgkldfermdelrahadaimvgigtvladdps
ltvksperkaarkaagksenpvrvvvdesartplnadifkkgeglriiavsnsapeekir
mleekalviktgafrvdltelaaklkemginslmveggatlnwgmlsaglvdevytfvgn
liiggktaptftdgegftenellglelssaekiedgillkwkvkgkk