PDB entry 5ud6

View 5ud6 on RCSB PDB site
Description: Crystal structure of DHDPS from Cyanidioschyzon merolae with lysine bound
Class: lyase
Keywords: dhdps, lyase
Deposited on 2016-12-23, released 2017-12-27
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-12-27, with a file datestamp of 2017-12-22.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dihydrodipicolinate synthase
    Species: Cyanidioschyzon merolae [TaxId:280699]
    Gene: CYME_CME179C
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5ud6a_
  • Chain 'B':
    Compound: Dihydrodipicolinate synthase
    Species: Cyanidioschyzon merolae [TaxId:280699]
    Gene: CYME_CME179C
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5ud6b_
  • Chain 'C':
    Compound: Dihydrodipicolinate synthase
    Species: Cyanidioschyzon merolae [TaxId:280699]
    Gene: CYME_CME179C
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5ud6c_
  • Chain 'D':
    Compound: Dihydrodipicolinate synthase
    Species: Cyanidioschyzon merolae [TaxId:280699]
    Gene: CYME_CME179C
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5ud6d_
  • Heterogens: CA, LYS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ud6A (A:)
mghhhhhhgenlyfqgsaqeverpkhffgrvitalvtpfkltgvevdygvaeslaahlae
ngsdaiivagttgesatltwseeyelfrvvksavagtkcrviagagsnsteeaieatkks
aklgldgtlqvvpyynkppqqgimahfraianaapdlpmmlynipgrtginmtaetsikl
aemcpnivalxeasgnleqfarirratspdfalysgddaltlpllslggngvvsvashfi
gpeiqrmiehfvdlgnpeeafrihcrymdlfealfvmanpipakaalrllgwpvgptrlp
ltditasaeqqlrqamiaagllsngsg

    Sequence, based on observed residues (ATOM records): (download) 
    >5ud6A (A:)
khffgrvitalvtpfkltgvevdygvaeslaahlaengsdaiivagttgesatltwseey
elfrvvksavagtkcrviagagsnsteeaieatkksaklgldgtlqvvpyynkppqqgim
ahfraianaapdlpmmlynipgrtginmtaetsiklaemcpnivalxeasgnleqfarir
ratspdfalysgddaltlpllslggngvvsvashfigpeiqrmiehfvdlgnpeeafrih
crymdlfealfvmanpipakaalrllgwpvgptrlpltditasaeqqlrqamiaagll

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5ud6B (B:)
mghhhhhhgenlyfqgsaqeverpkhffgrvitalvtpfkltgvevdygvaeslaahlae
ngsdaiivagttgesatltwseeyelfrvvksavagtkcrviagagsnsteeaieatkks
aklgldgtlqvvpyynkppqqgimahfraianaapdlpmmlynipgrtginmtaetsikl
aemcpnivalxeasgnleqfarirratspdfalysgddaltlpllslggngvvsvashfi
gpeiqrmiehfvdlgnpeeafrihcrymdlfealfvmanpipakaalrllgwpvgptrlp
ltditasaeqqlrqamiaagllsngsg

    Sequence, based on observed residues (ATOM records): (download) 
    >5ud6B (B:)
khffgrvitalvtpfkltgvevdygvaeslaahlaengsdaiivagttgesatltwseey
elfrvvksavagtkcrviagagsnsteeaieatkksaklgldgtlqvvpyynkppqqgim
ahfraianaapdlpmmlynipgrtginmtaetsiklaemcpnivalxeasgnleqfarir
ratspdfalysgddaltlpllslggngvvsvashfigpeiqrmiehfvdlgnpeeafrih
crymdlfealfvmanpipakaalrllgwpvgptrlpltditasaeqqlrqamiaagll

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5ud6C (C:)
mghhhhhhgenlyfqgsaqeverpkhffgrvitalvtpfkltgvevdygvaeslaahlae
ngsdaiivagttgesatltwseeyelfrvvksavagtkcrviagagsnsteeaieatkks
aklgldgtlqvvpyynkppqqgimahfraianaapdlpmmlynipgrtginmtaetsikl
aemcpnivalxeasgnleqfarirratspdfalysgddaltlpllslggngvvsvashfi
gpeiqrmiehfvdlgnpeeafrihcrymdlfealfvmanpipakaalrllgwpvgptrlp
ltditasaeqqlrqamiaagllsngsg

    Sequence, based on observed residues (ATOM records): (download) 
    >5ud6C (C:)
khffgrvitalvtpfkltgvevdygvaeslaahlaengsdaiivagttgesatltwseey
elfrvvksavagtkcrviagagsnsteeaieatkksaklgldgtlqvvpyynkppqqgim
ahfraianaapdlpmmlynipgrtginmtaetsiklaemcpnivalxeasgnleqfarir
ratspdfalysgddaltlpllslggngvvsvashfigpeiqrmiehfvdlgnpeeafrih
crymdlfealfvmanpipakaalrllgwpvgptrlpltditasaeqqlrqamiaaglls

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5ud6D (D:)
mghhhhhhgenlyfqgsaqeverpkhffgrvitalvtpfkltgvevdygvaeslaahlae
ngsdaiivagttgesatltwseeyelfrvvksavagtkcrviagagsnsteeaieatkks
aklgldgtlqvvpyynkppqqgimahfraianaapdlpmmlynipgrtginmtaetsikl
aemcpnivalxeasgnleqfarirratspdfalysgddaltlpllslggngvvsvashfi
gpeiqrmiehfvdlgnpeeafrihcrymdlfealfvmanpipakaalrllgwpvgptrlp
ltditasaeqqlrqamiaagllsngsg

    Sequence, based on observed residues (ATOM records): (download) 
    >5ud6D (D:)
khffgrvitalvtpfkltgvevdygvaeslaahlaengsdaiivagttgesatltwseey
elfrvvksavagtkcrviagagsnsteeaieatkksaklgldgtlqvvpyynkppqqgim
ahfraianaapdlpmmlynipgrtginmtaetsiklaemcpnivalxeasgnleqfarir
ratspdfalysgddaltlpllslggngvvsvashfigpeiqrmiehfvdlgnpeeafrih
crymdlfealfvmanpipakaalrllgwpvgptrlpltditasaeqqlrqamiaaglls