PDB entry 5u3d
View 5u3d on RCSB PDB site
Description: structure of meditope enabled trastuzumab i83e variant
Class: immune system
Keywords: immune system
Deposited on
2016-12-01, released
2018-03-14
The last revision prior to the SCOPe 2.07 freeze date was dated
2018-03-28, with a file datestamp of
2018-03-23.
Experiment type: XRAY
Resolution: 1.77 Å
R-factor: N/A
AEROSPACI score: 0.38
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: memab trastuzumab fab light chain i83e
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5u3da1, d5u3da2 - Chain 'B':
Compound: memab trastuzumab fab heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: immunoglobulin g binding protein a
Species: Staphylococcus aureus [TaxId:1280]
Gene: SPA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5u3dc1, d5u3dc2 - Chain 'E':
Compound: protein l
Species: Finegoldia magna [TaxId:1260]
Database cross-references and differences (RAF-indexed):
- Uniprot Q51918 (4-64)
- expression tag (2-3)
- engineered mutation (17)
- engineered mutation (38)
- engineered mutation (56-58)
Domains in SCOPe 2.07: d5u3de1, d5u3de2 - Heterogens: MRY, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>5u3dA (A:)
diqmtqspillsasvgdrvtitcrasqdvntavawyqqrtngsprlliysasflysgvps
rfsgsrsgtdftltisslqpedeadyycqqhyttpptfgagtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgec
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>5u3dC (C:)
gsynkdqqsafyeilnmpnlneaqrngfiqslkddpsqstnvlgeakklnesqa
- Chain 'E':
Sequence, based on SEQRES records: (download)
>5u3dE (E:)
sgsevtikvnlifadgkiqtaefkgtfeeataeayryaallakvngeytadledggnhmn
ikfag
Sequence, based on observed residues (ATOM records): (download)
>5u3dE (E:)
sevtikvnlifadgkiqtaefkgtfeeataeayryaallakvngeytadledggnhmnik
fag