PDB entry 5t1x

View 5t1x on RCSB PDB site
Description: Crystal Structure of Native Tarin Lectin
Class: sugar binding protein
Keywords: Tarin, GNA-related Lectin, SUGAR BINDING PROTEIN
Deposited on 2016-08-22, released 2016-09-14
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-22, with a file datestamp of 2017-11-17.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: lectin
    Species: Colocasia esculenta [TaxId:4460]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5t1xa_
  • Chain 'B':
    Compound: lectin
    Species: Colocasia esculenta [TaxId:4460]
    Database cross-references and differences (RAF-indexed):
    • PDB 5T1X (0-109)
    Domains in SCOPe 2.07: d5t1xb_
  • Chain 'C':
    Compound: lectin
    Species: Colocasia esculenta [TaxId:4460]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5t1xc_
  • Chain 'D':
    Compound: lectin
    Species: Colocasia esculenta [TaxId:4460]
    Database cross-references and differences (RAF-indexed):
    • PDB 5T1X (0-End)
    Domains in SCOPe 2.07: d5t1xd_
  • Chain 'E':
    Compound: lectin
    Species: Colocasia esculenta [TaxId:4460]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5t1xe_
  • Chain 'F':
    Compound: lectin
    Species: Colocasia esculenta [TaxId:4460]
    Database cross-references and differences (RAF-indexed):
    • PDB 5T1X (0-109)
    Domains in SCOPe 2.07: d5t1xf_
  • Chain 'G':
    Compound: lectin
    Species: Colocasia esculenta [TaxId:4460]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5t1xg_
  • Chain 'H':
    Compound: lectin
    Species: Colocasia esculenta [TaxId:4460]
    Database cross-references and differences (RAF-indexed):
    • PDB 5T1X (0-End)
    Domains in SCOPe 2.07: d5t1xh_
  • Heterogens: EDO, EPE, PGE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5t1xA (A:)
lgtnyllsgqtlntdghlkngdfdlvmqndcnlvlyngnwqsntanngrdckltltdyge
lvikngdgstvwrsraksvkgnyaavlhpdgrlvvfgpsvfkidpwvpgl

    Sequence, based on observed residues (ATOM records): (download) 
    >5t1xA (A:)
lgtnyllsgqtlntdghlkngdfdlvmqndcnlvlyngnwqsntanngrdckltltdyge
lvikngdgstvwrsraksvkgnyaavlhpdgrlvvfgpsvfkidpwvpg

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5t1xB (B:)
nipftdnllfsgqvlygdgrltaknhqlvmqgdcnlvlyggkygwqsnthgngehcflrl
nhkgeliikdddfktiwssnssskqgdyvlilrddgfaviygpaiwetsa

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5t1xC (C:)
lgtnyllsgqtlntdghlkngdfdlvmqndcnlvlyngnwqsntanngrdckltltdyge
lvikngdgstvwrsraksvkgnyaavlhpdgrlvvfgpsvfkidpwvpgl

    Sequence, based on observed residues (ATOM records): (download) 
    >5t1xC (C:)
lgtnyllsgqtlntdghlkngdfdlvmqndcnlvlyngnwqsntanngrdckltltdyge
lviknstvwrsraksvkgnyaavlhpdgrlvvfgpsvfkidpwvpgl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5t1xD (D:)
nipftdnllfsgqvlygdgrltaknhqlvmqgdcnlvlyggkygwqsnthgngehcflrl
nhkgeliikdddfktiwssnssskqgdyvlilrddgfaviygpaiwetsa

    Sequence, based on observed residues (ATOM records): (download) 
    >5t1xD (D:)
nipftdnllfsgqvlygdgrltaknhqlvmqgdcnlvlyggkygwqsnthgngehcflrl
nhkgeliikdddfktiwssnssskqgdyvlilrddgfaviygpaiwets

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5t1xE (E:)
lgtnyllsgqtlntdghlkngdfdlvmqndcnlvlyngnwqsntanngrdckltltdyge
lvikngdgstvwrsraksvkgnyaavlhpdgrlvvfgpsvfkidpwvpgl

    Sequence, based on observed residues (ATOM records): (download) 
    >5t1xE (E:)
lgtnyllsgqtlntdghlkngdfdlvmqndcnlvlyngnwqsntanngrdckltltdyge
lvikngdgstvwrsraksvkgnyaavlhpdgrlvvfgpsvfkidpwvpg

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5t1xF (F:)
nipftdnllfsgqvlygdgrltaknhqlvmqgdcnlvlyggkygwqsnthgngehcflrl
nhkgeliikdddfktiwssnssskqgdyvlilrddgfaviygpaiwetsa

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5t1xG (G:)
lgtnyllsgqtlntdghlkngdfdlvmqndcnlvlyngnwqsntanngrdckltltdyge
lvikngdgstvwrsraksvkgnyaavlhpdgrlvvfgpsvfkidpwvpgl

    Sequence, based on observed residues (ATOM records): (download) 
    >5t1xG (G:)
lgtnyllsgqtlntdghlkngdfdlvmqndcnlvlyngnwqsntanngrdckltltdyge
lviknggstvwrsraksvkgnyaavlhpdgrlvvfgpsvfkidpwvpgl

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5t1xH (H:)
nipftdnllfsgqvlygdgrltaknhqlvmqgdcnlvlyggkygwqsnthgngehcflrl
nhkgeliikdddfktiwssnssskqgdyvlilrddgfaviygpaiwetsa

    Sequence, based on observed residues (ATOM records): (download) 
    >5t1xH (H:)
nipftdnllfsgqvlygdgrltaknhqlvmqgdcnlvlyggkygwqsnthgngehcflrl
nhkgeliikdddfktiwssnssskqgdyvlilrddgfaviygpaiwets