PDB entry 5o2f

View 5o2f on RCSB PDB site
Description: Crystal structure of NDM-1 in complex with hydrolyzed ampicillin - new refinement
Class: hydrolase
Keywords: HYDROLASE, NDM-1, metallo-beta-lactamase
Deposited on 2017-05-20, released 2018-12-26
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-12-26, with a file datestamp of 2018-12-21.
Experiment type: XRAY
Resolution: 2.01 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Metallo-beta-lactamase type 2
    Species: Klebsiella pneumoniae [TaxId:573]
    Gene: blaNDM-1
    Database cross-references and differences (RAF-indexed):
    • Uniprot C7C422 (4-245)
      • expression tag (3)
    Domains in SCOPe 2.07: d5o2fa1, d5o2fa2
  • Chain 'B':
    Compound: Metallo-beta-lactamase type 2
    Species: Klebsiella pneumoniae [TaxId:573]
    Gene: blaNDM-1
    Database cross-references and differences (RAF-indexed):
    • Uniprot C7C422 (4-245)
      • expression tag (3)
    Domains in SCOPe 2.07: d5o2fb1, d5o2fb2
  • Heterogens: ZN, ZZ7, SO4, CL, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5o2fA (A:)
gshmgeirptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdgg
rvlvvdtawtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanal
snqlapqegmvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdia
fggclikdskakslgnlgdadtehyaasarafgaafpkasmivmshsapdsraaithtar
madklr

    Sequence, based on observed residues (ATOM records): (download) 
    >5o2fA (A:)
mgeirptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvl
vvdtawtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnq
lapqegmvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafgg
clikdskakslgnlgdadtehyaasarafgaafpkasmivmshsapdsraaithtarmad
klr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5o2fB (B:)
gshmgeirptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdgg
rvlvvdtawtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanal
snqlapqegmvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdia
fggclikdskakslgnlgdadtehyaasarafgaafpkasmivmshsapdsraaithtar
madklr

    Sequence, based on observed residues (ATOM records): (download) 
    >5o2fB (B:)
mgeirptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvl
vvdtawtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnq
lapqegmvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafgg
clikdskakslgnlgdadtehyaasarafgaafpkasmivmshsapdsraaithtarmad
klr