PDB entry 5mx6

View 5mx6 on RCSB PDB site
Description: Crystal structure of H. pylori purine nucleoside phosphorylase from clinical isolate HpPNP-2
Class: transferase
Keywords: purine nucleoside phosphorylase, clinical isolate, Helicobacter pylori, dead-end-complex, transferase
Deposited on 2017-01-21, released 2017-04-05
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-04-12, with a file datestamp of 2017-04-07.
Experiment type: XRAY
Resolution: 2.41 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
    • Uniprot K2JXG0 (0-232)
      • conflict (106)
    Domains in SCOPe 2.07: d5mx6a_
  • Chain 'B':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
    • Uniprot K2JXG0 (0-232)
      • conflict (106)
    Domains in SCOPe 2.07: d5mx6b_
  • Chain 'C':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
    • Uniprot K2JXG0 (0-232)
      • conflict (106)
    Domains in SCOPe 2.07: d5mx6c_
  • Chain 'D':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
    • Uniprot K2JXG0 (0-232)
      • conflict (106)
    Domains in SCOPe 2.07: d5mx6d_
  • Chain 'E':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
    • Uniprot K2JXG0 (0-232)
      • conflict (106)
    Domains in SCOPe 2.07: d5mx6e_
  • Chain 'F':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
    • Uniprot K2JXG0 (0-232)
      • conflict (106)
    Domains in SCOPe 2.07: d5mx6f_
  • Heterogens: SO4, HPA, ACT, PEG, PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5mx6A (A:)
mtphinakigdfypqcllcgdplrvsyiakkflqdakeitnvrnmlgfsgkykgkgislm
ghgmgiasctiyvteliktyqvkellrigtcgaispkvglkdiimatgastdsktnrvrf
lnhdlsatpdfelslrayqtakrlgidlkignvfssdffysfethafdlmaqynhlaiem
eaaglyatamelnakalclcsvsdhlitkealspkeriesfdnmiilalemms

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5mx6B (B:)
mtphinakigdfypqcllcgdplrvsyiakkflqdakeitnvrnmlgfsgkykgkgislm
ghgmgiasctiyvteliktyqvkellrigtcgaispkvglkdiimatgastdsktnrvrf
lnhdlsatpdfelslrayqtakrlgidlkignvfssdffysfethafdlmaqynhlaiem
eaaglyatamelnakalclcsvsdhlitkealspkeriesfdnmiilalemms

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5mx6C (C:)
mtphinakigdfypqcllcgdplrvsyiakkflqdakeitnvrnmlgfsgkykgkgislm
ghgmgiasctiyvteliktyqvkellrigtcgaispkvglkdiimatgastdsktnrvrf
lnhdlsatpdfelslrayqtakrlgidlkignvfssdffysfethafdlmaqynhlaiem
eaaglyatamelnakalclcsvsdhlitkealspkeriesfdnmiilalemms

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5mx6D (D:)
mtphinakigdfypqcllcgdplrvsyiakkflqdakeitnvrnmlgfsgkykgkgislm
ghgmgiasctiyvteliktyqvkellrigtcgaispkvglkdiimatgastdsktnrvrf
lnhdlsatpdfelslrayqtakrlgidlkignvfssdffysfethafdlmaqynhlaiem
eaaglyatamelnakalclcsvsdhlitkealspkeriesfdnmiilalemms

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5mx6E (E:)
mtphinakigdfypqcllcgdplrvsyiakkflqdakeitnvrnmlgfsgkykgkgislm
ghgmgiasctiyvteliktyqvkellrigtcgaispkvglkdiimatgastdsktnrvrf
lnhdlsatpdfelslrayqtakrlgidlkignvfssdffysfethafdlmaqynhlaiem
eaaglyatamelnakalclcsvsdhlitkealspkeriesfdnmiilalemms

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5mx6F (F:)
mtphinakigdfypqcllcgdplrvsyiakkflqdakeitnvrnmlgfsgkykgkgislm
ghgmgiasctiyvteliktyqvkellrigtcgaispkvglkdiimatgastdsktnrvrf
lnhdlsatpdfelslrayqtakrlgidlkignvfssdffysfethafdlmaqynhlaiem
eaaglyatamelnakalclcsvsdhlitkealspkeriesfdnmiilalemms