PDB entry 5kzd

View 5kzd on RCSB PDB site
Description: N-acetylneuraminate lyase from methicillin-resistant Staphylococcus aureus with bound sialic acid alditol
Class: lyase
Keywords: TIM-barrel, inhibitor, N-acetylneuraminate lyase, LYASE
Deposited on 2016-07-25, released 2017-01-11
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-01-11, with a file datestamp of 2017-01-06.
Experiment type: XRAY
Resolution: 2.33 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: n-acetylneuraminate lyase
    Species: Staphylococcus aureus (strain USA300) [TaxId:367830]
    Gene: nanA, SAUSA300_0315
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5kzda_
  • Chain 'B':
    Compound: n-acetylneuraminate lyase
    Species: Staphylococcus aureus (strain USA300) [TaxId:367830]
    Gene: nanA, SAUSA300_0315
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5kzdb_
  • Chain 'C':
    Compound: n-acetylneuraminate lyase
    Species: Staphylococcus aureus (strain USA300) [TaxId:367830]
    Gene: nanA, SAUSA300_0315
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5kzdc_
  • Chain 'D':
    Compound: n-acetylneuraminate lyase
    Species: Staphylococcus aureus (strain USA300) [TaxId:367830]
    Gene: nanA, SAUSA300_0315
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5kzdd_
  • Heterogens: RCJ, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5kzdA (A:)
mnkdlkglyaallvpfdengqvneqglkqiaqnaieteeldglyvngssgenfllnteqk
kqvfkvakeavgdkvkliaqvgsldlneaielgkyatelgydalsavtpfyypftfeeir
dyyfdiieatqnnmiiyaipdltgvnisieqfselfnhekivgvkytapnffllerirka
fpdklilsgfdemlvqatisgvdgaigstynvngrrarkifdlarqgqiqeayqlqhdsn
diietvlsmgiyptlkeilrhrgidaglpkrpfkpfneahrqtldqliakydl

    Sequence, based on observed residues (ATOM records): (download) 
    >5kzdA (A:)
nkdlkglyaallvpfdengqvneqglkqiaqnaieteeldglyvngssgenfllnteqkk
qvfkvakeavgdkvkliaqvgsldlneaielgkyatelgydalsavtpfyypftfeeird
yyfdiieatqnnmiiyaisieqfselfnhekivgvkytapnffllerirkafpdklilsg
fdemlvqatisgvdgaigstynvngrrarkifdlarqgqiqeayqlqhdsndiietvlsm
giyptlkeilrhrgidaglpkrpfkpfneahrqtldqliakydl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5kzdB (B:)
mnkdlkglyaallvpfdengqvneqglkqiaqnaieteeldglyvngssgenfllnteqk
kqvfkvakeavgdkvkliaqvgsldlneaielgkyatelgydalsavtpfyypftfeeir
dyyfdiieatqnnmiiyaipdltgvnisieqfselfnhekivgvkytapnffllerirka
fpdklilsgfdemlvqatisgvdgaigstynvngrrarkifdlarqgqiqeayqlqhdsn
diietvlsmgiyptlkeilrhrgidaglpkrpfkpfneahrqtldqliakydl

    Sequence, based on observed residues (ATOM records): (download) 
    >5kzdB (B:)
nkdlkglyaallvpfdengqvneqglkqiaqnaieteeldglyvngssgenfllnteqkk
qvfkvakeavgdkvkliaqvgsldlneaielgkyatelgydalsavtpfyypftfeeird
yyfdiieatqnnmiiyaisieqfselfnhekivgvkytapnffllerirkafpdklilsg
fdemlvqatisgvdgaigstynvngrrarkifdlarqgqiqeayqlqhdsndiietvlsm
giyptlkeilrhrgidaglpkrpfkpfneahrqtldqliakydl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5kzdC (C:)
mnkdlkglyaallvpfdengqvneqglkqiaqnaieteeldglyvngssgenfllnteqk
kqvfkvakeavgdkvkliaqvgsldlneaielgkyatelgydalsavtpfyypftfeeir
dyyfdiieatqnnmiiyaipdltgvnisieqfselfnhekivgvkytapnffllerirka
fpdklilsgfdemlvqatisgvdgaigstynvngrrarkifdlarqgqiqeayqlqhdsn
diietvlsmgiyptlkeilrhrgidaglpkrpfkpfneahrqtldqliakydl

    Sequence, based on observed residues (ATOM records): (download) 
    >5kzdC (C:)
nkdlkglyaallvpfdengqvneqglkqiaqnaieteeldglyvngssgenfllnteqkk
qvfkvakeavgdkvkliaqvgsldlneaielgkyatelgydalsavtpfyypftfeeird
yyfdiieatqnnmiiyaisieqfselfnhekivgvkytapnffllerirkafpdklilsg
fdemlvqatisgvdgaigstynvngrrarkifdlarqgqiqeayqlqhdsndiietvlsm
giyptlkeilrhrgidaglpkrpfkpfneahrqtldqliakydl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5kzdD (D:)
mnkdlkglyaallvpfdengqvneqglkqiaqnaieteeldglyvngssgenfllnteqk
kqvfkvakeavgdkvkliaqvgsldlneaielgkyatelgydalsavtpfyypftfeeir
dyyfdiieatqnnmiiyaipdltgvnisieqfselfnhekivgvkytapnffllerirka
fpdklilsgfdemlvqatisgvdgaigstynvngrrarkifdlarqgqiqeayqlqhdsn
diietvlsmgiyptlkeilrhrgidaglpkrpfkpfneahrqtldqliakydl

    Sequence, based on observed residues (ATOM records): (download) 
    >5kzdD (D:)
nkdlkglyaallvpfdengqvneqglkqiaqnaieteeldglyvngssgenfllnteqkk
qvfkvakeavgdkvkliaqvgsldlneaielgkyatelgydalsavtpfyypftfeeird
yyfdiieatqnnmiiyaisieqfselfnhekivgvkytapnffllerirkafpdklilsg
fdemlvqatisgvdgaigstynvngrrarkifdlarqgqiqeayqlqhdsndiietvlsm
giyptlkeilrhrgidaglpkrpfkpfneahrqtldqliakydl