PDB entry 5j56

View 5j56 on RCSB PDB site
Description: rta-v1c7
Class: hydrolase/immune system
Keywords: Ricin, RTA, single chain antibody (VHH), HYDROLASE-IMMUNE SYSTEM complex
Deposited on 2016-04-01, released 2016-12-07
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-09-13, with a file datestamp of 2017-09-08.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ricin
    Species: Ricinus communis [TaxId:3988]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5j56a_
  • Chain 'B':
    Compound: VHH single chain antibody V1C7
    Species: VICUGNA PACOS [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 5J56 (0-128)
    Domains in SCOPe 2.07: d5j56b_
  • Heterogens: PG4, ACY, EDO, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5j56A (A:)
mifpkqypiinfttagatvqsytnfiravrgrlttgadvrheipvlpnrvglpinqrfil
velsnhaelsvtlaldvtnayvvgyragnsayffhpdnqedaeaithlftdvqnrytfaf
ggnydrleqlagnlrenielgngpleeaisalyyystggtqlptlarsfiiciqmiseaa
rfqyiegemrtrirynrrsapdpsvitlenswgrlstaiqesnqgafaspiqlqrrngsk
fsvydvsilipiialmvyrcapppssqf

    Sequence, based on observed residues (ATOM records): (download) 
    >5j56A (A:)
qypiinfttagatvqsytnfiravrgrlttadvrheipvlpnrvglpinqrfilvelsnh
aelsvtlaldvtnayvvgyragnsayffhpdnqedaeaithlftdvqnrytfafggnydr
leqlagnlrenielgngpleeaisalyyystggtqlptlarsfiiciqmiseaarfqyie
gemrtrirynrrsapdpsvitlenswgrlstaiqesnqgafaspiqlqrrngskfsvydv
silipiialmvyrc

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5j56B (B:)
aqvqlvesggglvqpggslrlscvasefsgftldyyaigwfrqapgkereglssissssd
gftsysdsvkgrftisrdnakntvylqmnslkpedtavyycaarlggwasfspqeydywg
qgtqvtvss