PDB entry 5ito

View 5ito on RCSB PDB site
Description: Structure of the periplasmic binding protein M117N-NocT from A. tumefaciens in complex with octopine
Class: membrane protein
Keywords: Periplasmic binding protein, opine, octopine, membrane protein
Deposited on 2016-03-17, released 2016-11-30
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-09-06, with a file datestamp of 2017-09-01.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nopaline-binding periplasmic protein
    Species: Agrobacterium fabrum (strain C58 / ATCC 33970) [TaxId:176299]
    Gene: nocT, Atu6027, AGR_pTi_67
    Database cross-references and differences (RAF-indexed):
    • Uniprot P35120
      • conflict (92)
    Domains in SCOPe 2.07: d5itoa_
  • Chain 'B':
    Compound: Nopaline-binding periplasmic protein
    Species: Agrobacterium fabrum (strain C58 / ATCC 33970) [TaxId:176299]
    Gene: nocT, Atu6027, AGR_pTi_67
    Database cross-references and differences (RAF-indexed):
    • Uniprot P35120
      • conflict (92)
    Domains in SCOPe 2.07: d5itob_
  • Heterogens: PEG, EDO, 1PE, 6DB, TOE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5itoA (A:)
mkdyksitiategsyapynfkdaggkligfdidlgndlckrmnieckfveqawdgiipsl
tagrydaimaamgiqparekviafsrpylltpntflttadspllktqvaienlpldnitp
eqkaeldkftkifegvkfgvqagtsheafmkqmmpsvqistydtidnvvmdlkagridas
lasvsflkpltdkpdnkdlkmfgprmtgglfgkgvgvgirkedadlkalfdkaidaaiad
gtvqklsqqwfgydaspkqhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5itoA (A:)
dyksitiategsyapynfkdaggkligfdidlgndlckrmnieckfveqawdgiipslta
grydaimaamgiqparekviafsrpylltpntflttadspllktqvaienlpldnitpeq
kaeldkftkifegvkfgvqagtsheafmkqmmpsvqistydtidnvvmdlkagridasla
svsflkpltdkpdnkdlkmfgprmtgglfgkgvgvgirkedadlkalfdkaidaaiadgt
vqklsqqwfgydasp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5itoB (B:)
mkdyksitiategsyapynfkdaggkligfdidlgndlckrmnieckfveqawdgiipsl
tagrydaimaamgiqparekviafsrpylltpntflttadspllktqvaienlpldnitp
eqkaeldkftkifegvkfgvqagtsheafmkqmmpsvqistydtidnvvmdlkagridas
lasvsflkpltdkpdnkdlkmfgprmtgglfgkgvgvgirkedadlkalfdkaidaaiad
gtvqklsqqwfgydaspkqhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5itoB (B:)
yksitiategsyapynfkdaggkligfdidlgndlckrmnieckfveqawdgiipsltag
rydaimaamgiqparekviafsrpylltpntflttadspllktqvaienlpldnitpeqk
aeldkftkifegvkfgvqagtsheafmkqmmpsvqistydtidnvvmdlkagridaslas
vsflkpltdkpdnkdlkmfgprmtgglfgkgvgvgirkedadlkalfdkaidaaiadgtv
qklsqqwfgydaspk