PDB entry 5imw

View 5imw on RCSB PDB site
Description: Trapped Toxin
Class: toxin
Keywords: Toxin, Locked
Deposited on 2016-03-07, released 2016-08-24
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-09-14, with a file datestamp of 2016-09-09.
Experiment type: XRAY
Resolution: 2.89 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: intermedilysin
    Species: Streptococcus intermedius [TaxId:1338]
    Gene: ily
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9LCB8 (0-470)
      • conflict (138)
      • conflict (289)
      • conflict (304)
    Domains in SCOPe 2.07: d5imwa_
  • Chain 'B':
    Compound: intermedilysin
    Species: Streptococcus intermedius [TaxId:1338]
    Gene: ily
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9LCB8 (0-470)
      • conflict (138)
      • conflict (289)
      • conflict (304)
    Domains in SCOPe 2.07: d5imwb_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5imwA (A:)
seaakkalndyiwglqydklnilthqgeklknhssreafhrpgeyvviekkkqsisnats
klsvssanddrifpgallkadqsllenlptlipvnrgkttisvnlpglkngesnltvenp
snstvrtavnnlvekwiqkyskthavparmqyesisaqsmsqlqakfgadfskvgaplnv
dfssvhkgekqvfianfrqvyytasvdspnspsalfgsgitptdlinrgvnsktppvyvs
nvsygramyvkfettskstkvqaaidavvkgaklkagteyenilkntkicavvlggnpge
askvctgnidtlkdliqkgsnfsaqspavpisyttsfvkdnsiatiqnntdyietkvtsy
kdgaltlnhdgafvarfyvyweelghdadgyetirsrswsgngynrgahysttlrfkgnv
rnirvkvlgatglawepwrliyskndlplvpqrnistwgttlhpqfedkvv

    Sequence, based on observed residues (ATOM records): (download) 
    >5imwA (A:)
seaakkalndyiwglqydklnilthqgeklknhssreafhrpgeyvviekkkqsisnats
klsvssanddrifpgallkadqsllenlptlipvnrgkttisvnlpglkngesnltvenp
snstvrtavnnlvekwiqkyskthavparmqyesisaqsmsqlqakfgadfskvgaplnv
dfssvhkgekqvfianfrqvyytasvdspnspsalfgsgitptdlinrgvnsktppvyvs
nvsygramyvkfettskstkvqaaidavvkenilkntkicavvlggnpgeaskvctgnid
tlkdliqkgsnfsaqspavpisyttsfvkdnsiatiqnntdyietkvtsykdgaltlnhd
gafvarfyvyweelghdadgyetirsrswsgngynrgahysttlrfkgnvrnirvkvlga
tpwrliyskndlplvpqrnistwgttlhpqfedkvv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5imwB (B:)
seaakkalndyiwglqydklnilthqgeklknhssreafhrpgeyvviekkkqsisnats
klsvssanddrifpgallkadqsllenlptlipvnrgkttisvnlpglkngesnltvenp
snstvrtavnnlvekwiqkyskthavparmqyesisaqsmsqlqakfgadfskvgaplnv
dfssvhkgekqvfianfrqvyytasvdspnspsalfgsgitptdlinrgvnsktppvyvs
nvsygramyvkfettskstkvqaaidavvkgaklkagteyenilkntkicavvlggnpge
askvctgnidtlkdliqkgsnfsaqspavpisyttsfvkdnsiatiqnntdyietkvtsy
kdgaltlnhdgafvarfyvyweelghdadgyetirsrswsgngynrgahysttlrfkgnv
rnirvkvlgatglawepwrliyskndlplvpqrnistwgttlhpqfedkvv

    Sequence, based on observed residues (ATOM records): (download) 
    >5imwB (B:)
seaakkalndyiwglqydklnilthqgeklknhssreafhrpgeyvviekkkqsisnats
klsvssanddrifpgallkadqsllenlptlipvnrgkttisvnlpglkngesnltvenp
snstvrtavnnlvekwiqkyskthavparmqyesisaqsmsqlqakfgadfskvgaplnv
dfssvhkgekqvfianfrqvyytasvdspnspsalfgsgitptdlinrgvnsktppvyvs
nvsygramyvkfettskstkvqaaidavvkgenilkntkicavvlggnpgeaskvctgni
dtlkdliqkgsnfsaqspavpisyttsfvkdnsiatiqnntdyietkvtsykdgaltlnh
dgafvarfyvyweelghdadgyetirsrswsgngynrgahysttlrfkgnvrnirvkvlg
atglawepwrliyskndlplvpqrnistwgttlhpqfedkvv