PDB entry 5d4j

View 5d4j on RCSB PDB site
Description: Chloride-bound form of a copper nitrite reductase from Alcaligenes faecals
Class: oxidoreductase
Keywords: copper, oxidoreductase
Deposited on 2015-08-07, released 2016-03-09
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-06-22, with a file datestamp of 2016-06-17.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Copper-containing nitrite reductase
    Species: Alcaligenes faecalis [TaxId:511]
    Gene: nirK, nir
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5d4ja1, d5d4ja2
  • Chain 'B':
    Compound: Copper-containing nitrite reductase
    Species: Alcaligenes faecalis [TaxId:511]
    Gene: nirK, nir
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5d4jb1, d5d4jb2
  • Chain 'C':
    Compound: Copper-containing nitrite reductase
    Species: Alcaligenes faecalis [TaxId:511]
    Gene: nirK, nir
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5d4jc1, d5d4jc2
  • Heterogens: CU, CL, GOL, ACY, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5d4jA (A:)
mataaeiaalprqkvelvdppfvhahsqvaeggpkvveftmvieekkividdagtevham
afngtvpgplmvvhqddyleltlinpetntlmhnidfhaatgalgggglteinpgektil
rfkatkpgvfvyhcappgmvpwhvvsgmngaimvlpreglhdgkgkaltydkiyyvgeqd
fyvprdengkykkyeapgdayedtvkvmrtltpthvvfngavgaltgdkamtaavgekvl
ivhsqanrdtrphligghgdyvwatgkfntppdvdqetwfipggaagaafytfqqpgiya
yvnhnlieafelgaaahfkvtgewnddlmtsvlapsgtlvpr

    Sequence, based on observed residues (ATOM records): (download) 
    >5d4jA (A:)
aaeiaalprqkvelvdppfvhahsqvaeggpkvveftmvieekkividdagtevhamafn
gtvpgplmvvhqddyleltlinpetntlmhnidfhaatgalgggglteinpgektilrfk
atkpgvfvyhcappgmvpwhvvsgmngaimvlpreglhdgkgkaltydkiyyvgeqdfyv
prdengkykkyeapgdayedtvkvmrtltpthvvfngavgaltgdkamtaavgekvlivh
sqanrdtrphligghgdyvwatgkfntppdvdqetwfipggaagaafytfqqpgiyayvn
hnlieafelgaaahfkvtgewnddlmtsvlapsgt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5d4jB (B:)
mataaeiaalprqkvelvdppfvhahsqvaeggpkvveftmvieekkividdagtevham
afngtvpgplmvvhqddyleltlinpetntlmhnidfhaatgalgggglteinpgektil
rfkatkpgvfvyhcappgmvpwhvvsgmngaimvlpreglhdgkgkaltydkiyyvgeqd
fyvprdengkykkyeapgdayedtvkvmrtltpthvvfngavgaltgdkamtaavgekvl
ivhsqanrdtrphligghgdyvwatgkfntppdvdqetwfipggaagaafytfqqpgiya
yvnhnlieafelgaaahfkvtgewnddlmtsvlapsgtlvpr

    Sequence, based on observed residues (ATOM records): (download) 
    >5d4jB (B:)
ataaeiaalprqkvelvdppfvhahsqvaeggpkvveftmvieekkividdagtevhama
fngtvpgplmvvhqddyleltlinpetntlmhnidfhaatgalgggglteinpgektilr
fkatkpgvfvyhcappgmvpwhvvsgmngaimvlpreglhdgkgkaltydkiyyvgeqdf
yvprdengkykkyeapgdayedtvkvmrtltpthvvfngavgaltgdkamtaavgekvli
vhsqanrdtrphligghgdyvwatgkfntppdvdqetwfipggaagaafytfqqpgiyay
vnhnlieafelgaaahfkvtgewnddlmtsvlapsg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5d4jC (C:)
mataaeiaalprqkvelvdppfvhahsqvaeggpkvveftmvieekkividdagtevham
afngtvpgplmvvhqddyleltlinpetntlmhnidfhaatgalgggglteinpgektil
rfkatkpgvfvyhcappgmvpwhvvsgmngaimvlpreglhdgkgkaltydkiyyvgeqd
fyvprdengkykkyeapgdayedtvkvmrtltpthvvfngavgaltgdkamtaavgekvl
ivhsqanrdtrphligghgdyvwatgkfntppdvdqetwfipggaagaafytfqqpgiya
yvnhnlieafelgaaahfkvtgewnddlmtsvlapsgtlvpr

    Sequence, based on observed residues (ATOM records): (download) 
    >5d4jC (C:)
ataaeiaalprqkvelvdppfvhahsqvaeggpkvveftmvieekkividdagtevhama
fngtvpgplmvvhqddyleltlinpetntlmhnidfhaatgalgggglteinpgektilr
fkatkpgvfvyhcappgmvpwhvvsgmngaimvlpreglhdgkgkaltydkiyyvgeqdf
yvprdengkykkyeapgdayedtvkvmrtltpthvvfngavgaltgdkamtaavgekvli
vhsqanrdtrphligghgdyvwatgkfntppdvdqetwfipggaagaafytfqqpgiyay
vnhnlieafelgaaahfkvtgewnddlmtsvlapsg