PDB entry 5d4i

View 5d4i on RCSB PDB site
Description: Intact nitrite complex of a copper nitrite reductase determined by serial femtosecond crystallography
Class: oxidoreductase
Keywords: copper, oxidoreductase
Deposited on 2015-08-07, released 2016-03-09
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-06-22, with a file datestamp of 2016-06-17.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Copper-containing nitrite reductase
    Species: Alcaligenes faecalis [TaxId:511]
    Gene: nirK, nir
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5d4ia1, d5d4ia2, d5d4ia3
  • Chain 'B':
    Compound: Copper-containing nitrite reductase
    Species: Alcaligenes faecalis [TaxId:511]
    Gene: nirK, nir
    Database cross-references and differences (RAF-indexed):
    • Uniprot P38501 (1-337)
      • expression tag (338-341)
    Domains in SCOPe 2.07: d5d4ib1, d5d4ib2, d5d4ib3
  • Chain 'C':
    Compound: Copper-containing nitrite reductase
    Species: Alcaligenes faecalis [TaxId:511]
    Gene: nirK, nir
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5d4ic1, d5d4ic2
  • Heterogens: CU, NO2, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5d4iA (A:)
mataaeiaalprqkvelvdppfvhahsqvaeggpkvveftmvieekkividdagtevham
afngtvpgplmvvhqddyleltlinpetntlmhnidfhaatgalgggglteinpgektil
rfkatkpgvfvyhcappgmvpwhvvsgmngaimvlpreglhdgkgkaltydkiyyvgeqd
fyvprdengkykkyeapgdayedtvkvmrtltpthvvfngavgaltgdkamtaavgekvl
ivhsqanrdtrphligghgdyvwatgkfntppdvdqetwfipggaagaafytfqqpgiya
yvnhnlieafelgaaahfkvtgewnddlmtsvlapsgtlvpr

    Sequence, based on observed residues (ATOM records): (download) 
    >5d4iA (A:)
aaeiaalprqkvelvdppfvhahsqvaeggpkvveftmvieekkividdagtevhamafn
gtvpgplmvvhqddyleltlinpetntlmhnidfhaatgalgggglteinpgektilrfk
atkpgvfvyhcappgmvpwhvvsgmngaimvlpreglhdgkgkaltydkiyyvgeqdfyv
prdengkykkyeapgdayedtvkvmrtltpthvvfngavgaltgdkamtaavgekvlivh
sqanrdtrphligghgdyvwatgkfntppdvdqetwfipggaagaafytfqqpgiyayvn
hnlieafelgaaahfkvtgewnddlmtsvlapsg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5d4iB (B:)
mataaeiaalprqkvelvdppfvhahsqvaeggpkvveftmvieekkividdagtevham
afngtvpgplmvvhqddyleltlinpetntlmhnidfhaatgalgggglteinpgektil
rfkatkpgvfvyhcappgmvpwhvvsgmngaimvlpreglhdgkgkaltydkiyyvgeqd
fyvprdengkykkyeapgdayedtvkvmrtltpthvvfngavgaltgdkamtaavgekvl
ivhsqanrdtrphligghgdyvwatgkfntppdvdqetwfipggaagaafytfqqpgiya
yvnhnlieafelgaaahfkvtgewnddlmtsvlapsgtlvpr

    Sequence, based on observed residues (ATOM records): (download) 
    >5d4iB (B:)
ataaeiaalprqkvelvdppfvhahsqvaeggpkvveftmvieekkividdagtevhama
fngtvpgplmvvhqddyleltlinpetntlmhnidfhaatgalgggglteinpgektilr
fkatkpgvfvyhcappgmvpwhvvsgmngaimvlpreglhdgkgkaltydkiyyvgeqdf
yvprdengkykkyeapgdayedtvkvmrtltpthvvfngavgaltgdkamtaavgekvli
vhsqanrdtrphligghgdyvwatgkfntppdvdqetwfipggaagaafytfqqpgiyay
vnhnlieafelgaaahfkvtgewnddlmtsvlapsgtlvpr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5d4iC (C:)
mataaeiaalprqkvelvdppfvhahsqvaeggpkvveftmvieekkividdagtevham
afngtvpgplmvvhqddyleltlinpetntlmhnidfhaatgalgggglteinpgektil
rfkatkpgvfvyhcappgmvpwhvvsgmngaimvlpreglhdgkgkaltydkiyyvgeqd
fyvprdengkykkyeapgdayedtvkvmrtltpthvvfngavgaltgdkamtaavgekvl
ivhsqanrdtrphligghgdyvwatgkfntppdvdqetwfipggaagaafytfqqpgiya
yvnhnlieafelgaaahfkvtgewnddlmtsvlapsgtlvpr

    Sequence, based on observed residues (ATOM records): (download) 
    >5d4iC (C:)
aaeiaalprqkvelvdppfvhahsqvaeggpkvveftmvieekkividdagtevhamafn
gtvpgplmvvhqddyleltlinpetntlmhnidfhaatgalgggglteinpgektilrfk
atkpgvfvyhcappgmvpwhvvsgmngaimvlpreglhdgkgkaltydkiyyvgeqdfyv
prdengkykkyeapgdayedtvkvmrtltpthvvfngavgaltgdkamtaavgekvlivh
sqanrdtrphligghgdyvwatgkfntppdvdqetwfipggaagaafytfqqpgiyayvn
hnlieafelgaaahfkvtgewnddlmtsvlapsg