PDB entry 4zg1
View 4zg1 on RCSB PDB site
Description: Crystal structure of a nanobody raised against KDM5B
Class: protein binding
Keywords: Nanobody, Single domain antibody, CDR3 loop, beta sandwich, protein binding
Deposited on
2015-04-22, released
2015-05-06
The last revision prior to the SCOPe 2.07 freeze date was dated
2015-10-28, with a file datestamp of
2015-10-23.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.35
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: nb17
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4zg1a1, d4zg1a2 - Chain 'B':
Compound: nb17
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4zg1b1, d4zg1b2 - Chain 'C':
Compound: nb17
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4zg1c1, d4zg1c2 - Chain 'D':
Compound: nb17
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4zg1d1, d4zg1d2 - Chain 'E':
Compound: nb17
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4zg1e1, d4zg1e2 - Chain 'F':
Compound: nb17
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4zg1f1, d4zg1f2 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>4zg1A (A:)
qvqlqesggglvqaggslrlscaasgstfgirtmgwyrqapgkqrdlvaiissggstdya
dsvkgrftisrdnakntvylqmdslkpedtaiyycnarvgitmlahwgqgtqvtvss
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>4zg1B (B:)
qvqlqesggglvqaggslrlscaasgstfgirtmgwyrqapgkqrdlvaiissggstdya
dsvkgrftisrdnakntvylqmdslkpedtaiyycnarvgitmlahwgqgtqvtvss
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>4zg1C (C:)
qvqlqesggglvqaggslrlscaasgstfgirtmgwyrqapgkqrdlvaiissggstdya
dsvkgrftisrdnakntvylqmdslkpedtaiyycnarvgitmlahwgqgtqvtvss
- Chain 'D':
Sequence, based on SEQRES records: (download)
>4zg1D (D:)
qvqlqesggglvqaggslrlscaasgstfgirtmgwyrqapgkqrdlvaiissggstdya
dsvkgrftisrdnakntvylqmdslkpedtaiyycnarvgitmlahwgqgtqvtvss
Sequence, based on observed residues (ATOM records): (download)
>4zg1D (D:)
qvqlqesggglvqaggslrlscaasgstfgirtmgwyrqapgkqrdlvaiissggstdya
dsvkgrftisrdnakntvylqmdslkpedtaiyycnarvgitmlahwgqgtqvtvs
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>4zg1E (E:)
qvqlqesggglvqaggslrlscaasgstfgirtmgwyrqapgkqrdlvaiissggstdya
dsvkgrftisrdnakntvylqmdslkpedtaiyycnarvgitmlahwgqgtqvtvss
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>4zg1F (F:)
qvqlqesggglvqaggslrlscaasgstfgirtmgwyrqapgkqrdlvaiissggstdya
dsvkgrftisrdnakntvylqmdslkpedtaiyycnarvgitmlahwgqgtqvtvss