PDB entry 4z1c

View 4z1c on RCSB PDB site
Description: Structure of Cadmium bound KDO8PS from H.pylori
Class: transferase
Keywords: Helicobacter pylori, lipopolysaccharide biosynthesis, metal bound, Transferase
Deposited on 2015-03-27, released 2016-03-09
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-03-09, with a file datestamp of 2016-03-04.
Experiment type: XRAY
Resolution: 1.93 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 2-dehydro-3-deoxyphosphooctonate aldolase
    Species: Helicobacter pylori (strain ATCC 700392 / 26695) [TaxId:85962]
    Gene: kdsA, HP_0003
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4z1ca_
  • Chain 'B':
    Compound: 2-dehydro-3-deoxyphosphooctonate aldolase
    Species: Helicobacter pylori (strain ATCC 700392 / 26695) [TaxId:85962]
    Gene: kdsA, HP_0003
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4z1cb_
  • Heterogens: CD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4z1cA (A:)
mktsktktpksvliagpcvieslenlrsiatklqplannerldfyfkasfdkanrtsles
yrgpglekglemlqtikeefgykiltdvhesyqasvaakvadilqipaflcrqtdlivev
sqtnaivnikkgqfmnpkdmqysvlkalktrdksiqsptyetalkngvwlcergssfgyg
nlvvdmrslkimrefapvifdathsvqmpggangkssgdssfapilaraaaavgidglfa
ethvdpknalsdganmlkpdeleqlvtdmlkiqnlf

    Sequence, based on observed residues (ATOM records): (download) 
    >4z1cA (A:)
ksvliagpcvieslenlrsiatklqplannerldfyfkasfdkanrtslesyrgpglekg
lemlqtikeefgykiltdvhesyqasvaakvadilqipaflcrqtdlivevsqtnaivni
kkgqfmnpkdmqysvlkalktrdksiqsptyetalkngvwlcergssfgygnlvvdmrsl
kimrefapvifdathsvqmpssfapilaraaaavgidglfaethvdpknalsdganmlkp
deleqlvtdmlkiqnlf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4z1cB (B:)
mktsktktpksvliagpcvieslenlrsiatklqplannerldfyfkasfdkanrtsles
yrgpglekglemlqtikeefgykiltdvhesyqasvaakvadilqipaflcrqtdlivev
sqtnaivnikkgqfmnpkdmqysvlkalktrdksiqsptyetalkngvwlcergssfgyg
nlvvdmrslkimrefapvifdathsvqmpggangkssgdssfapilaraaaavgidglfa
ethvdpknalsdganmlkpdeleqlvtdmlkiqnlf

    Sequence, based on observed residues (ATOM records): (download) 
    >4z1cB (B:)
ksvliagpcvieslenlrsiatklqplannerldfyfkasfdkanrtslesyrgpglekg
lemlqtikeefgykiltdvhesyqasvaakvadilqipaflcrqtdlivevsqtnaivni
kkgqfmnpkdmqysvlkalktrdksiqsptyetalkngvwlcergssfgygnlvvdmrsl
kimrefapvifdathsvqmpssfapilaraaaavgidglfaethvdpknalsdganmlkp
deleqlvtdmlkiqnlf