PDB entry 4yl2

View 4yl2 on RCSB PDB site
Description: Aerococcus viridans L-lactate oxidase Y191F mutant
Class: oxidoreductase
Keywords: flavin, oxidase, TIM barrel, OXIDOREDUCTASE
Deposited on 2015-03-04, released 2015-08-26
The last revision prior to the SCOPe 2.07 freeze date was dated 2015-11-11, with a file datestamp of 2015-11-06.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Lactate oxidase
    Species: Aerococcus viridans [TaxId:1377]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q44467 (Start-373)
      • conflict (101)
      • conflict (162)
      • engineered mutation (190)
      • conflict (231)
      • conflict (254)
    Domains in SCOPe 2.07: d4yl2a_
  • Chain 'B':
    Compound: Lactate oxidase
    Species: Aerococcus viridans [TaxId:1377]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q44467 (Start-373)
      • conflict (101)
      • conflict (162)
      • engineered mutation (190)
      • conflict (231)
      • conflict (254)
    Domains in SCOPe 2.07: d4yl2b_
  • Chain 'C':
    Compound: Lactate oxidase
    Species: Aerococcus viridans [TaxId:1377]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q44467 (Start-373)
      • conflict (101)
      • conflict (162)
      • engineered mutation (190)
      • conflict (231)
      • conflict (254)
    Domains in SCOPe 2.07: d4yl2c_
  • Chain 'D':
    Compound: Lactate oxidase
    Species: Aerococcus viridans [TaxId:1377]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q44467 (Start-373)
      • conflict (101)
      • conflict (162)
      • engineered mutation (190)
      • conflict (231)
      • conflict (254)
    Domains in SCOPe 2.07: d4yl2d_
  • Heterogens: FMN, PYR, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4yl2A (A:)
mnnndieynapseikyidvvntydleeeaskvvphggfnyiagasgdewtkrandrawkh
kllyprlaqdveapdtsteilghkikapfimapiaahglahatkeagtaravsefgtims
isaysgatfeeiseglnggprwfqiymakddqqnrdildeakgdgataiiltadstvsgn
rdrdvknkfvfpfgmpivqrylrgtaegmslnniygaskqkisprdieeiaahsglpvfv
kgiqhpedadmaikagasgiwvsnhgarqlyeapgsfdtlpaiaervnkrvpivfdsgvr
rgehvakalasgadvvalgrpvlfglalggwqgaysvldyfqkdltrvmqltgsqnvedl
kgldlfdnpygyey

    Sequence, based on observed residues (ATOM records): (download) 
    >4yl2A (A:)
ynapseikyidvvntydleeeaskvvphggfnyiagasgdewtkrandrawkhkllyprl
aqdveapdtsteilghkikapfimapiaahglahatkeagtaravsefgtimsisaysga
tfeeiseglnggprwfqiymakddqqnrdildeakgdgataiiltadstvsgnrdrdvkn
kfvfpfgmpivqrylrgtaegmslnniygaskqkisprdieeiaahsglpvfvkgiqhpe
dadmaikagasgiwvsnhgarqlyeapgsfdtlpaiaervnkrvpivfdsgvrrgehvak
alasgadvvalgrpvlfglalggwqgaysvldyfqkdltrvmqltgsqnvedlkgldlfd
npygyey

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4yl2B (B:)
mnnndieynapseikyidvvntydleeeaskvvphggfnyiagasgdewtkrandrawkh
kllyprlaqdveapdtsteilghkikapfimapiaahglahatkeagtaravsefgtims
isaysgatfeeiseglnggprwfqiymakddqqnrdildeakgdgataiiltadstvsgn
rdrdvknkfvfpfgmpivqrylrgtaegmslnniygaskqkisprdieeiaahsglpvfv
kgiqhpedadmaikagasgiwvsnhgarqlyeapgsfdtlpaiaervnkrvpivfdsgvr
rgehvakalasgadvvalgrpvlfglalggwqgaysvldyfqkdltrvmqltgsqnvedl
kgldlfdnpygyey

    Sequence, based on observed residues (ATOM records): (download) 
    >4yl2B (B:)
ynapseikyidvvntydleeeaskvvphggfnyiagasgdewtkrandrawkhkllyprl
aqdveapdtsteilghkikapfimapiaahglahatkeagtaravsefgtimsisaysga
tfeeiseglnggprwfqiymakddqqnrdildeakgdgataiiltadstvsgnrdrdvkn
kfvfpfgmpivqrylrgtaegmslnniygaskqkisprdieeiaahsglpvfvkgiqhpe
dadmaikagasgiwvsnhgarqlyeapgsfdtlpaiaervnkrvpivfdsgvrrgehvak
alasgadvvalgrpvlfglalggwqgaysvldyfqkdltrvmqltgsqnvedlkgldlfd
npygyey

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4yl2C (C:)
mnnndieynapseikyidvvntydleeeaskvvphggfnyiagasgdewtkrandrawkh
kllyprlaqdveapdtsteilghkikapfimapiaahglahatkeagtaravsefgtims
isaysgatfeeiseglnggprwfqiymakddqqnrdildeakgdgataiiltadstvsgn
rdrdvknkfvfpfgmpivqrylrgtaegmslnniygaskqkisprdieeiaahsglpvfv
kgiqhpedadmaikagasgiwvsnhgarqlyeapgsfdtlpaiaervnkrvpivfdsgvr
rgehvakalasgadvvalgrpvlfglalggwqgaysvldyfqkdltrvmqltgsqnvedl
kgldlfdnpygyey

    Sequence, based on observed residues (ATOM records): (download) 
    >4yl2C (C:)
ynapseikyidvvntydleeeaskvvphggfnyiagasgdewtkrandrawkhkllyprl
aqdveapdtsteilghkikapfimapiaahglahatkeagtaravsefgtimsisaysga
tfeeiseglnggprwfqiymakddqqnrdildeakgdgataiiltadstvsgnrdrdvkn
kfvfpfgmpivqrylrgtaegmslnniygaskqkisprdieeiaahsglpvfvkgiqhpe
dadmaikagasgiwvsnhgarqlyeapgsfdtlpaiaervnkrvpivfdsgvrrgehvak
alasgadvvalgrpvlfglalggwqgaysvldyfqkdltrvmqltgsqnvedlkgldlfd
npygyey

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4yl2D (D:)
mnnndieynapseikyidvvntydleeeaskvvphggfnyiagasgdewtkrandrawkh
kllyprlaqdveapdtsteilghkikapfimapiaahglahatkeagtaravsefgtims
isaysgatfeeiseglnggprwfqiymakddqqnrdildeakgdgataiiltadstvsgn
rdrdvknkfvfpfgmpivqrylrgtaegmslnniygaskqkisprdieeiaahsglpvfv
kgiqhpedadmaikagasgiwvsnhgarqlyeapgsfdtlpaiaervnkrvpivfdsgvr
rgehvakalasgadvvalgrpvlfglalggwqgaysvldyfqkdltrvmqltgsqnvedl
kgldlfdnpygyey

    Sequence, based on observed residues (ATOM records): (download) 
    >4yl2D (D:)
ynapseikyidvvntydleeeaskvvphggfnyiagasgdewtkrandrawkhkllyprl
aqdveapdtsteilghkikapfimapiaahglahatkeagtaravsefgtimsisaysga
tfeeiseglnggprwfqiymakddqqnrdildeakgdgataiiltadstvsgnrdrdvkn
kfvfpfgmpivqryltaegmslnniygaskqkisprdieeiaahsglpvfvkgiqhpeda
dmaikagasgiwvsnhgarqlyeapgsfdtlpaiaervnkrvpivfdsgvrrgehvakal
asgadvvalgrpvlfglalggwqgaysvldyfqkdltrvmqltgsqnvedlkgldlfdnp
ygyey