PDB entry 4qqz

View 4qqz on RCSB PDB site
Description: Crystal structure of T. fusca Cas3-AMPPNP
Class: Hydrolase/DNA
Keywords: Hydrolase, Helicase, Hydrolase-DNA complex
Deposited on 2014-06-30, released 2014-08-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-09-24, with a file datestamp of 2014-09-19.
Experiment type: XRAY
Resolution: 2.93 Å
R-factor: 0.183
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: CRISPR-associated helicase, Cas3 family
    Species: Thermobifida fusca [TaxId:269800]
    Gene: Tfu_1593
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4qqza1, d4qqza2, d4qqza3, d4qqza4
  • Chain 'B':
    Compound: DNA (5'-d(p*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*a)-3')
  • Chain 'C':
    Compound: CRISPR-associated helicase, Cas3 family
    Species: Thermobifida fusca [TaxId:269800]
    Gene: Tfu_1593
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4qqzc1, d4qqzc2, d4qqzc3, d4qqzc4
  • Chain 'D':
    Compound: DNA (5'-d(p*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*a)-3')
  • Chain 'E':
    Compound: CRISPR-associated helicase, Cas3 family
    Species: Thermobifida fusca [TaxId:269800]
    Gene: Tfu_1593
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4qqze1, d4qqze2, d4qqze3, d4qqze4
  • Chain 'F':
    Compound: DNA (5'-d(p*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*a)-3')
  • Chain 'G':
    Compound: CRISPR-associated helicase, Cas3 family
    Species: Thermobifida fusca [TaxId:269800]
    Gene: Tfu_1593
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4qqzg1, d4qqzg2, d4qqzg3, d4qqzg4
  • Chain 'H':
    Compound: DNA (5'-d(p*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*a)-3')
  • Heterogens: FE, ANP

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4qqzA (A:)
    mgsshhhhhhssglvprgshmpehdstddkhgippldlrfwakerglrgktyplvchsld
    aaaaalvlwneylspglrdtiassmetdeehaghciafwaglhdigkltrefqqqiaidl
    saypgeelsgeqrshaaatgkwlpfalpslgypngglvtglvaqmlgghhgtfhphpsfq
    srnplaefgfssphwekqrhallhavfdatgrptppdmldgptasvvcglviladwlvsq
    edfllerltslpadgsasalrahfetslrripslldaaglrpitvppatftesfphlskp
    nglqaslakhlpclctgpglvlitapmgegkteaayhvadllgkatgrpgrflalptmat
    adqmhtrlkeyaryrventdlprsstlallhsmawlnpdyapadlpgvskvlsnlghrdp
    faatdwlmgrkrgllapwavgtidqalmavlrakhnalrlfglagkvvvvdeahavdpym
    qvlleqllrwlgtldvpvvllsatlhhsianslvkaylegargrrwnrsepqpvsevsyp
    gwlhvdarigkvtrssdvdplpiattprkplevrlvdvpvkegalnrstvlakeltplvk
    qggcaaiicttvaeaqgvydllsqwfatlgedapdlyllhsrfpnrqrteitativdlfg
    kegaqsgrrptrgavlvatqvveqsldldvdlmisdlapvslllqragrcwrhehlgiin
    rpqwakqpelvvltpeqngdadrapwfprswtsvyplallqrtytllrrrngapvqiped
    vqqlvddvydddslaedleadmermgeelaqrglarnavipdpddaednlngltefsfdv
    dehvlatrfgagsvrvlcyyvdtagnrwldpectvefpeqgtgregrftmadcrdlvart
    ipvrmgpwasqltednhppeawresfylrdlvlipqrvtdegavlptetggrewlldpck
    glif
    

    Sequence, based on observed residues (ATOM records): (download)
    >4qqzA (A:)
    ppldlrfwakerglrgktyplvchsldaaaaalvlwneylspglrdtiassmetdeehag
    hciafwaglhdigkltrefqqqiaidlsaypgeelsgeqrshaaatgkwlpfalpslgyp
    ngglvtglvaqmlgghhgtfhphpsfqsrnplaefgfssphwekqrhallhavfdatgrp
    tppdmldgptasvvcglviladwlvsqedfllerltslpadgsasalrahfetslrrips
    lldaaglrpitvppatftesfphlskpnglqaslakhlpclctgpglvlitapmgegkte
    aayhvadllgkatgrpgrflalptmatadqmhtrlkeyaryrveprsstlallhsmawln
    pdyapalghrdpfaatdwlmgrkrgllapwavgtidqalmavlrakhnalrlfglagkvv
    vvdeahavdpymqvlleqllrwlgtldvpvvllsatlhhsianslvkaylegargrrwnr
    sepqpvsevsypgwlhvdarigkvtrssdvdplpiattprkplevrlvdvpvkegalnrs
    tvlakeltplvkqggcaaiicttvaeaqgvydllsqwfatlapdlyllhsrfpnrqrtei
    tativdlfgkegaqsgrrptavlvatqvveqsldldvdlmisdlapvslllqragrcwrh
    ehlgiinrpqwakqpelvvltpeqnrapwfprswtsvyplallqrtytllrrrngapvqi
    pedvqqlvddvydddslaedleadmermgeelaqrglarnavipdpddaednlngltefs
    fhvlatrfgagsvrvlcyyvdtagnrwldpectvefpeqgtgregrftmadcrdlvarti
    pvrmgpwasqltednhppeawresfylrdlvlipqrvtdegavlptetggrewlldpckg
    lif
    

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >4qqzC (C:)
    mgsshhhhhhssglvprgshmpehdstddkhgippldlrfwakerglrgktyplvchsld
    aaaaalvlwneylspglrdtiassmetdeehaghciafwaglhdigkltrefqqqiaidl
    saypgeelsgeqrshaaatgkwlpfalpslgypngglvtglvaqmlgghhgtfhphpsfq
    srnplaefgfssphwekqrhallhavfdatgrptppdmldgptasvvcglviladwlvsq
    edfllerltslpadgsasalrahfetslrripslldaaglrpitvppatftesfphlskp
    nglqaslakhlpclctgpglvlitapmgegkteaayhvadllgkatgrpgrflalptmat
    adqmhtrlkeyaryrventdlprsstlallhsmawlnpdyapadlpgvskvlsnlghrdp
    faatdwlmgrkrgllapwavgtidqalmavlrakhnalrlfglagkvvvvdeahavdpym
    qvlleqllrwlgtldvpvvllsatlhhsianslvkaylegargrrwnrsepqpvsevsyp
    gwlhvdarigkvtrssdvdplpiattprkplevrlvdvpvkegalnrstvlakeltplvk
    qggcaaiicttvaeaqgvydllsqwfatlgedapdlyllhsrfpnrqrteitativdlfg
    kegaqsgrrptrgavlvatqvveqsldldvdlmisdlapvslllqragrcwrhehlgiin
    rpqwakqpelvvltpeqngdadrapwfprswtsvyplallqrtytllrrrngapvqiped
    vqqlvddvydddslaedleadmermgeelaqrglarnavipdpddaednlngltefsfdv
    dehvlatrfgagsvrvlcyyvdtagnrwldpectvefpeqgtgregrftmadcrdlvart
    ipvrmgpwasqltednhppeawresfylrdlvlipqrvtdegavlptetggrewlldpck
    glif
    

    Sequence, based on observed residues (ATOM records): (download)
    >4qqzC (C:)
    ppldlrfwakerglrgktyplvchsldaaaaalvlwneylspglrdtiassmetdeehag
    hciafwaglhdigkltrefqqqiaidlsaypgeelsgeqrshaaatgkwlpfalpslgyp
    ngglvtglvaqmlgghhgtfhphpsfqsrnplaefgfssphwekqrhallhavfdatgrp
    tppdmldgptasvvcglviladwlvsqedfllerltslpadgsasalrahfetslrrips
    lldaaglrpitvppatftesfphlskpnglqaslakhlpclctgpglvlitapmgegkte
    aayhvadllgkatgrpgrflalptmatadqmhtrlkeyaryrventrsstlallhsmawl
    npdyapadpfaatdwlmgrkrgllapwavgtidqalmavlrakhnalrlfglagkvvvvd
    eahavdpymqvlleqllrwlgtldvpvvllsatlhhsianslvkaylegargrrwnrsep
    qpvsevsypgwlhvdarigkvtrssdvdplpiattprkplevrlvdvpvkegalnrstvl
    akeltplvkqggcaaiicttvaeaqgvydllsqwfatlgedapdlyllhsrfpnrqrtei
    tativdlfgkegaqsgrrptrgavlvatqvveqsldldvdlmisdlapvslllqragrcw
    rhehlgiinrpqwakqpelvvltpeqnapwfprswtsvyplallqrtytllrrrngapvq
    ipedvqqlvddvydddslaedleadmermgeelaqrglarnavipdpddaednlngltef
    svlatrfgagsvrvlcyyvdtagnrwldpectvefpeqgtgregrftmadcrdlvartip
    vrmgpwasqltednhppeawresfylrdlvlipqrvtdegavlptetggrewlldpckgl
    if
    

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >4qqzE (E:)
    mgsshhhhhhssglvprgshmpehdstddkhgippldlrfwakerglrgktyplvchsld
    aaaaalvlwneylspglrdtiassmetdeehaghciafwaglhdigkltrefqqqiaidl
    saypgeelsgeqrshaaatgkwlpfalpslgypngglvtglvaqmlgghhgtfhphpsfq
    srnplaefgfssphwekqrhallhavfdatgrptppdmldgptasvvcglviladwlvsq
    edfllerltslpadgsasalrahfetslrripslldaaglrpitvppatftesfphlskp
    nglqaslakhlpclctgpglvlitapmgegkteaayhvadllgkatgrpgrflalptmat
    adqmhtrlkeyaryrventdlprsstlallhsmawlnpdyapadlpgvskvlsnlghrdp
    faatdwlmgrkrgllapwavgtidqalmavlrakhnalrlfglagkvvvvdeahavdpym
    qvlleqllrwlgtldvpvvllsatlhhsianslvkaylegargrrwnrsepqpvsevsyp
    gwlhvdarigkvtrssdvdplpiattprkplevrlvdvpvkegalnrstvlakeltplvk
    qggcaaiicttvaeaqgvydllsqwfatlgedapdlyllhsrfpnrqrteitativdlfg
    kegaqsgrrptrgavlvatqvveqsldldvdlmisdlapvslllqragrcwrhehlgiin
    rpqwakqpelvvltpeqngdadrapwfprswtsvyplallqrtytllrrrngapvqiped
    vqqlvddvydddslaedleadmermgeelaqrglarnavipdpddaednlngltefsfdv
    dehvlatrfgagsvrvlcyyvdtagnrwldpectvefpeqgtgregrftmadcrdlvart
    ipvrmgpwasqltednhppeawresfylrdlvlipqrvtdegavlptetggrewlldpck
    glif
    

    Sequence, based on observed residues (ATOM records): (download)
    >4qqzE (E:)
    ppldlrfwakerglrgktyplvchsldaaaaalvlwneylspglrdtiassmetdeehag
    hciafwaglhdigkltrefqqqiaidlsaypgeelsgeqrshaaatgkwlpfalpslgyp
    ngglvtglvaqmlgghhgtfhphpsfqsrnplaefgfssphwekqrhallhavfdatgrp
    tppdmldgptasvvcglviladwlvsqedfllerltslpadgsasalrahfetslrrips
    lldaaglrpitvppatftesfphlskpnglqaslakhlpclctgpglvlitapmgegkte
    aayhvadllgkatgrpgrflalptmatadqmhtrlkeyaryrvenprsstlallhsmawl
    npdyapadpfaatdwlmgrkrgllapwavgtidqalmavlrakhnalrlfglagkvvvvd
    eahavdpymqvlleqllrwlgtldvpvvllsatlhhsianslvkaylegargrrwnrsep
    qpvsevsypgwlhvdarigkvtrssdvdplpiattprkplevrlvdvpvkegalnrstvl
    akeltplvkqggcaaiicttvaeaqgvydllsqwfatlapdlyllhsrfpnrqrteitat
    ivdlfgkegaqsgrrptrgavlvatqvveqsldldvdlmisdlapvslllqragrcwrhe
    hlgiinrpqwakqpelvvltpeqnrapwfprswtsvyplallqrtytllrrrngapvqip
    edvqqlvddvydddslaedleadmermgeelaqrglarnavipdpddaednlngltefvl
    atrfgagsvrvlcyyvdtagnrwldpectvefpeqgtgregrftmadcrdlvartipvrm
    gpwasqltednhppeawresfylrdlvlipqrvtdegavlptetggrewlldpckglif
    

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >4qqzG (G:)
    mgsshhhhhhssglvprgshmpehdstddkhgippldlrfwakerglrgktyplvchsld
    aaaaalvlwneylspglrdtiassmetdeehaghciafwaglhdigkltrefqqqiaidl
    saypgeelsgeqrshaaatgkwlpfalpslgypngglvtglvaqmlgghhgtfhphpsfq
    srnplaefgfssphwekqrhallhavfdatgrptppdmldgptasvvcglviladwlvsq
    edfllerltslpadgsasalrahfetslrripslldaaglrpitvppatftesfphlskp
    nglqaslakhlpclctgpglvlitapmgegkteaayhvadllgkatgrpgrflalptmat
    adqmhtrlkeyaryrventdlprsstlallhsmawlnpdyapadlpgvskvlsnlghrdp
    faatdwlmgrkrgllapwavgtidqalmavlrakhnalrlfglagkvvvvdeahavdpym
    qvlleqllrwlgtldvpvvllsatlhhsianslvkaylegargrrwnrsepqpvsevsyp
    gwlhvdarigkvtrssdvdplpiattprkplevrlvdvpvkegalnrstvlakeltplvk
    qggcaaiicttvaeaqgvydllsqwfatlgedapdlyllhsrfpnrqrteitativdlfg
    kegaqsgrrptrgavlvatqvveqsldldvdlmisdlapvslllqragrcwrhehlgiin
    rpqwakqpelvvltpeqngdadrapwfprswtsvyplallqrtytllrrrngapvqiped
    vqqlvddvydddslaedleadmermgeelaqrglarnavipdpddaednlngltefsfdv
    dehvlatrfgagsvrvlcyyvdtagnrwldpectvefpeqgtgregrftmadcrdlvart
    ipvrmgpwasqltednhppeawresfylrdlvlipqrvtdegavlptetggrewlldpck
    glif
    

    Sequence, based on observed residues (ATOM records): (download)
    >4qqzG (G:)
    ppldlrfwakerglrgktyplvchsldaaaaalvlwneylspglrdtiassmetdeehag
    hciafwaglhdigkltrefqqqiaidlsaypgeelsgeqrshaaatgkwlpfalpslgyp
    ngglvtglvaqmlgghhgtfhphpsfqsrnplaefgfssphwekqrhallhavfdatgrp
    tppdmldgptasvvcglviladwlvsqedfllerltslpadgsasalrahfetslrrips
    lldaaglrpitvppatftesfphlskpnglqaslakhlpclctgpglvlitapmgegkte
    aayhvadllgkatgrpgrflalptmatadqmhtrlkeyaryrvensstlallhsmawlnp
    dyapadpfaatdwlmgrkrgllapwavgtidqalmavlrakhnalrlfglagkvvvvdea
    havdpymqvlleqllrwlgtldvpvvllsatlhhsianslvkaylegargrrwnrsepqp
    vsevsypgwlhvdarigkvtrssdvdplpiattprkplevrlvdvpvkegalnrstvlak
    eltplvkqggcaaiicttvaeaqgvydllsqwfatlgapdlyllhsrfpnrqrteitati
    vdlfgkegaqsgrrptrgavlvatqvveqsldldvdlmisdlapvslllqragrcwrheh
    lgiinrpqwakqpelvvltpeqnrapwfprswtsvyplallqrtytllrrrngapvqipe
    dvqqlvddvydddslaedleadmermgeelaqrglarnavipdpddaednlngltefsvl
    atrfgagsvrvlcyyvtagnrwldpectvefpeqgtgregrftmadcrdlvartipvrmg
    pwasqltednhppeawresfylrdlvlipqavlptetggrewlldpckglif
    

  • Chain 'H':
    No sequence available.