PDB entry 4onv

View 4onv on RCSB PDB site
Description: Crystal structure of YagE, a KDG aldolase protein in complex with 2-Keto-3-deoxy gluconate
Class: lyase
Keywords: tim barrel, NAL superfamily, Aldolase class I, LYASE
Deposited on 2014-01-29, released 2015-01-14
The last revision prior to the SCOPe 2.07 freeze date was dated 2015-01-14, with a file datestamp of 2015-01-09.
Experiment type: XRAY
Resolution: 2.57 Å
R-factor: 0.248
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Probable 2-keto-3-deoxy-galactonate aldolase YagE
    Species: Escherichia coli [TaxId:83333]
    Gene: b0268, JW0261, yagE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4onva_
  • Chain 'B':
    Compound: Probable 2-keto-3-deoxy-galactonate aldolase YagE
    Species: Escherichia coli [TaxId:83333]
    Gene: b0268, JW0261, yagE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4onvb_
  • Chain 'C':
    Compound: Probable 2-keto-3-deoxy-galactonate aldolase YagE
    Species: Escherichia coli [TaxId:83333]
    Gene: b0268, JW0261, yagE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4onvc_
  • Chain 'D':
    Compound: Probable 2-keto-3-deoxy-galactonate aldolase YagE
    Species: Escherichia coli [TaxId:83333]
    Gene: b0268, JW0261, yagE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4onvd_
  • Heterogens: EDO, GOL, KDG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4onvA (A:)
mgsshhhhhhsagenlyfqgqqgdlmpqsalftgiippvstiftadgqldkpgtaalidd
likagvdglfflgsggefsqlgaeerkaiarfaidhvdrrvpvligtggtnaretielsq
haqqagadgivvinpyywkvseanliryfeqvadsvtlpvmlynfpaltgqdltpalvkt
ladsrsniigikdtidsvahlrsmihtvkgahphftvlcgyddhlfntlllggdgaisas
gnfapqvsvnllkawrdgdvakaagyhqtllqipqmyqldtpfvnvikeaivlcgrpvst
hvlppaspldeprkaqlktllqqlklccgrtrappppplrsgc

    Sequence, based on observed residues (ATOM records): (download) 
    >4onvA (A:)
alftgiippvstiftadgqldkpgtaaliddlikagvdglfflgsggefsqlgaeerkai
arfaidhvdrrvpvligtggtnaretielsqhaqqagadgivvinpyywkvseanliryf
eqvadsvtlpvmlynfpaltgqdltpalvktladsrsniigikdtidsvahlrsmihtvk
gahphftvlcgyddhlfntlllggdgaisasgnfapqvsvnllkawrdgdvakaagyhqt
llqipqmyqldtpfvnvikeaivlcgrpvsthvlppaspldeprkaqlktllqqlklc

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4onvB (B:)
mgsshhhhhhsagenlyfqgqqgdlmpqsalftgiippvstiftadgqldkpgtaalidd
likagvdglfflgsggefsqlgaeerkaiarfaidhvdrrvpvligtggtnaretielsq
haqqagadgivvinpyywkvseanliryfeqvadsvtlpvmlynfpaltgqdltpalvkt
ladsrsniigikdtidsvahlrsmihtvkgahphftvlcgyddhlfntlllggdgaisas
gnfapqvsvnllkawrdgdvakaagyhqtllqipqmyqldtpfvnvikeaivlcgrpvst
hvlppaspldeprkaqlktllqqlklccgrtrappppplrsgc

    Sequence, based on observed residues (ATOM records): (download) 
    >4onvB (B:)
alftgiippvstiftadgqldkpgtaaliddlikagvdglfflgsggefsqlgaeerkai
arfaidhvdrrvpvligtggtnaretielsqhaqqagadgivvinpyywkvseanliryf
eqvadsvtlpvmlynfpaltgqdltpalvktladsrsniigikdtidsvahlrsmihtvk
gahphftvlcgyddhlfntlllggdgaisasgnfapqvsvnllkawrdgdvakaagyhqt
llqipqmyqldtpfvnvikeaivlcgrpvsthvlppaspldeprkaqlktllqqlklc

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4onvC (C:)
mgsshhhhhhsagenlyfqgqqgdlmpqsalftgiippvstiftadgqldkpgtaalidd
likagvdglfflgsggefsqlgaeerkaiarfaidhvdrrvpvligtggtnaretielsq
haqqagadgivvinpyywkvseanliryfeqvadsvtlpvmlynfpaltgqdltpalvkt
ladsrsniigikdtidsvahlrsmihtvkgahphftvlcgyddhlfntlllggdgaisas
gnfapqvsvnllkawrdgdvakaagyhqtllqipqmyqldtpfvnvikeaivlcgrpvst
hvlppaspldeprkaqlktllqqlklccgrtrappppplrsgc

    Sequence, based on observed residues (ATOM records): (download) 
    >4onvC (C:)
alftgiippvstiftadgqldkpgtaaliddlikagvdglfflgsggefsqlgaeerkai
arfaidhvdrrvpvligtggtnaretielsqhaqqagadgivvinpyywkvseanliryf
eqvadsvtlpvmlynfpaltgqdltpalvktladsrsniigikdtidsvahlrsmihtvk
gahphftvlcgyddhlfntlllggdgaisasgnfapqvsvnllkawrdgdvakaagyhqt
llqipqmyqldtpfvnvikeaivlcgrpvsthvlppaspldeprkaqlktllqqlklc

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4onvD (D:)
mgsshhhhhhsagenlyfqgqqgdlmpqsalftgiippvstiftadgqldkpgtaalidd
likagvdglfflgsggefsqlgaeerkaiarfaidhvdrrvpvligtggtnaretielsq
haqqagadgivvinpyywkvseanliryfeqvadsvtlpvmlynfpaltgqdltpalvkt
ladsrsniigikdtidsvahlrsmihtvkgahphftvlcgyddhlfntlllggdgaisas
gnfapqvsvnllkawrdgdvakaagyhqtllqipqmyqldtpfvnvikeaivlcgrpvst
hvlppaspldeprkaqlktllqqlklccgrtrappppplrsgc

    Sequence, based on observed residues (ATOM records): (download) 
    >4onvD (D:)
alftgiippvstiftadgqldkpgtaaliddlikagvdglfflgsggefsqlgaeerkai
arfaidhvdrrvpvligtggtnaretielsqhaqqagadgivvinpyywkvseanliryf
eqvadsvtlpvmlynfpaltgqdltpalvktladsrsniigikdtidsvahlrsmihtvk
gahphftvlcgyddhlfntlllggdgaisasgnfapqvsvnllkawrdgdvakaagyhqt
llqipqmyqldtpfvnvikeaivlcgrpvsthvlppaspldeprkaqlktllqqlklc