PDB entry 4nyt

View 4nyt on RCSB PDB site
Description: L-Ficolin Complexed to Phosphocholine
Class: immune system
Keywords: Soluble innate immune recognition, Extracellular, IMMUNE SYSTEM
Deposited on 2013-12-11, released 2014-10-29
The last revision prior to the SCOPe 2.07 freeze date was dated 2014-12-24, with a file datestamp of 2014-12-19.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: 0.214
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ficolin-2
    Species: Homo sapiens [TaxId:9606]
    Gene: FCN2
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q15485
      • see remark 999 (96)
      • see remark 999 (175)
    Domains in SCOPe 2.07: d4nyta_
  • Chain 'B':
    Compound: ficolin-2
    Species: Homo sapiens [TaxId:9606]
    Gene: FCN2
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q15485
      • see remark 999 (96)
      • see remark 999 (175)
    Domains in SCOPe 2.07: d4nytb_
  • Chain 'C':
    Compound: ficolin-2
    Species: Homo sapiens [TaxId:9606]
    Gene: FCN2
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q15485 (0-End)
      • see remark 999 (96)
      • see remark 999 (175)
    Domains in SCOPe 2.07: d4nytc_
  • Heterogens: ACT, CA, PO4, NAG, PC, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4nytA (A:)
pcltgprtckdlldrghflsgwhtiylpdcrpltvlcdmdtdgggwtvfqrrvdgsvdfy
rdwatykqgfgsrlgefwlgndnihaltaqgtselrtdlvdfednyqfakyrsfkvadea
ekynlvlgafvegsagdsltfhnnqsfstkdqdndlntgncavmfqgawwyknchtsnln
grylrgthgsfanginwksgkgynysykvsemkvrpa

    Sequence, based on observed residues (ATOM records): (download) 
    >4nytA (A:)
gprtckdlldrghflsgwhtiylpdcrpltvlcdmdtdgggwtvfqrrvdgsvdfyrdwa
tykqgfgsrlgefwlgndnihaltaqgtselrtdlvdfednyqfakyrsfkvadeaekyn
lvlgafvegsagdsltfhnnqsfstkdqdndlntgncavmfqgawwyknchtsnlngryl
rgthgsfanginwksgkgynysykvsemkvrp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4nytB (B:)
pcltgprtckdlldrghflsgwhtiylpdcrpltvlcdmdtdgggwtvfqrrvdgsvdfy
rdwatykqgfgsrlgefwlgndnihaltaqgtselrtdlvdfednyqfakyrsfkvadea
ekynlvlgafvegsagdsltfhnnqsfstkdqdndlntgncavmfqgawwyknchtsnln
grylrgthgsfanginwksgkgynysykvsemkvrpa

    Sequence, based on observed residues (ATOM records): (download) 
    >4nytB (B:)
gprtckdlldrghflsgwhtiylpdcrpltvlcdmdtdgggwtvfqrrvdgsvdfyrdwa
tykqgfgsrlgefwlgndnihaltaqgtselrtdlvdfednyqfakyrsfkvadeaekyn
lvlgafvegsagdsltfhnnqsfstkdqdndlntgncavmfqgawwyknchtsnlngryl
rgthgsfanginwksgkgynysykvsemkvrp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4nytC (C:)
pcltgprtckdlldrghflsgwhtiylpdcrpltvlcdmdtdgggwtvfqrrvdgsvdfy
rdwatykqgfgsrlgefwlgndnihaltaqgtselrtdlvdfednyqfakyrsfkvadea
ekynlvlgafvegsagdsltfhnnqsfstkdqdndlntgncavmfqgawwyknchtsnln
grylrgthgsfanginwksgkgynysykvsemkvrpa

    Sequence, based on observed residues (ATOM records): (download) 
    >4nytC (C:)
pcltgprtckdlldrghflsgwhtiylpdcrpltvlcdmdtdgggwtvfqrrvdgsvdfy
rdwatykqgfgsrlgefwlgndnihaltaqgtselrtdlvdfednyqfakyrsfkvadea
ekynlvlgafvegsagdsltfhnnqsfstkdqdndlntgncavmfqgawwyknchtsnln
grylrgthgsfanginwksgkgynysykvsemkvrp