PDB entry 4mhi

View 4mhi on RCSB PDB site
Description: Crystal structure of a H5N1 influenza virus hemagglutinin from A/goose/Guangdong/1/96
Class: viral protein
Keywords: H5N1 influenza virus, epitope, glycoprotein, progenitor, VIRAL PROTEIN
Deposited on 2013-08-29, released 2013-10-02
The last revision prior to the SCOPe 2.03 freeze date was dated 2013-11-20, with a file datestamp of 2013-11-15.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.192
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza A virus [TaxId:93838]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Q0U6 (4-End)
      • expression tag (2-3)
    Domains in SCOPe 2.03: d4mhia_
  • Chain 'B':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza A virus [TaxId:93838]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza A virus [TaxId:93838]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Q0U6 (4-End)
      • expression tag (2-3)
    Domains in SCOPe 2.03: d4mhic_
  • Chain 'D':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza A virus [TaxId:93838]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza A virus [TaxId:93838]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Q0U6 (4-End)
      • expression tag (2-3)
    Domains in SCOPe 2.03: d4mhie_
  • Chain 'F':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza A virus [TaxId:93838]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza A virus [TaxId:93838]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Q0U6 (4-End)
      • expression tag (2-3)
    Domains in SCOPe 2.03: d4mhig_
  • Chain 'H':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza A virus [TaxId:93838]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza A virus [TaxId:93838]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Q0U6 (4-End)
      • expression tag (2-3)
    Domains in SCOPe 2.03: d4mhii_
  • Chain 'J':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza A virus [TaxId:93838]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza A virus [TaxId:93838]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Q0U6 (4-End)
      • expression tag (2-3)
    Domains in SCOPe 2.03: d4mhik_
  • Chain 'L':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza A virus [TaxId:93838]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza A virus [TaxId:93838]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Q0U6 (4-End)
      • expression tag (2-3)
    Domains in SCOPe 2.03: d4mhim_
  • Chain 'N':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza A virus [TaxId:93838]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza A virus [TaxId:93838]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Q0U6 (4-End)
      • expression tag (2-3)
    Domains in SCOPe 2.03: d4mhio_
  • Chain 'P':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza A virus [TaxId:93838]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza A virus [TaxId:93838]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Q0U6 (4-End)
      • expression tag (2-3)
    Domains in SCOPe 2.03: d4mhiq_
  • Chain 'R':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza A virus [TaxId:93838]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4mhiA (A:)
adpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilrdcs
vagwllgnpmcdefinvpewsyivekaspandlcypgdfndyeelkhllsrtnhfekiqi
ipksswsnhdassgvssacpyhgrssffrnvvwlikknsayptikrsynntnqedllvlw
gihhpndaaeqtklyqnpttyisvgtstlnqrlvpeiatrpkvngqsgrmeffwtilkpn
dainfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihp
ltigecpkyvksnrlvlatglrntpqrerrrkkr

    Sequence, based on observed residues (ATOM records): (download) 
    >4mhiA (A:)
pgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilrdcsva
gwllgnpmcdefinvpewsyivekaspandlcypgdfndyeelkhllsrtnhfekiqiip
ksswsnhdassgvssacpyhgrssffrnvvwlikknsayptikrsynntnqedllvlwgi
hhpndaaeqtklyqnpttyisvgtstlnqrlvpeiatrpkvngqsgrmeffwtilkpnda
infesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplt
igecpkyvksnrlvlatglrntp

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4mhiC (C:)
adpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilrdcs
vagwllgnpmcdefinvpewsyivekaspandlcypgdfndyeelkhllsrtnhfekiqi
ipksswsnhdassgvssacpyhgrssffrnvvwlikknsayptikrsynntnqedllvlw
gihhpndaaeqtklyqnpttyisvgtstlnqrlvpeiatrpkvngqsgrmeffwtilkpn
dainfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihp
ltigecpkyvksnrlvlatglrntpqrerrrkkr

    Sequence, based on observed residues (ATOM records): (download) 
    >4mhiC (C:)
pgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilrdcsva
gwllgnpmcdefinvpewsyivekaspandlcypgdfndyeelkhllsrtnhfekiqiip
ksswsnhdassgvssacpyhgrssffrnvvwlikknsayptikrsynntnqedllvlwgi
hhpndaaeqtklyqnpttyisvgtstlnqrlvpeiatrpkvngqsgrmeffwtilkpnda
infesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplt
igecpkyvksnrlvlatglrntp

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4mhiE (E:)
adpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilrdcs
vagwllgnpmcdefinvpewsyivekaspandlcypgdfndyeelkhllsrtnhfekiqi
ipksswsnhdassgvssacpyhgrssffrnvvwlikknsayptikrsynntnqedllvlw
gihhpndaaeqtklyqnpttyisvgtstlnqrlvpeiatrpkvngqsgrmeffwtilkpn
dainfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihp
ltigecpkyvksnrlvlatglrntpqrerrrkkr

    Sequence, based on observed residues (ATOM records): (download) 
    >4mhiE (E:)
pgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilrdcsva
gwllgnpmcdefinvpewsyivekaspandlcypgdfndyeelkhllsrtnhfekiqiip
ksswsnhdassgvssacpyhgrssffrnvvwlikknsayptikrsynntnqedllvlwgi
hhpndaaeqtklyqnpttyisvgtstlnqrlvpeiatrpkvngqsgrmeffwtilkpnda
infesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplt
igecpkyvksnrlvlatglrntp

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >4mhiG (G:)
adpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilrdcs
vagwllgnpmcdefinvpewsyivekaspandlcypgdfndyeelkhllsrtnhfekiqi
ipksswsnhdassgvssacpyhgrssffrnvvwlikknsayptikrsynntnqedllvlw
gihhpndaaeqtklyqnpttyisvgtstlnqrlvpeiatrpkvngqsgrmeffwtilkpn
dainfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihp
ltigecpkyvksnrlvlatglrntpqrerrrkkr

    Sequence, based on observed residues (ATOM records): (download) 
    >4mhiG (G:)
pgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilrdcsva
gwllgnpmcdefinvpewsyivekaspandlcypgdfndyeelkhllsrtnhfekiqiip
ksswsnhdassgvssacpyhgrssffrnvvwlikknsayptikrsynntnqedllvlwgi
hhpndaaeqtklyqnpttyisvgtstlnqrlvpeiatrpkvngqsgrmeffwtilkpnda
infesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplt
igecpkyvksnrlvlatglrntp

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >4mhiI (I:)
adpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilrdcs
vagwllgnpmcdefinvpewsyivekaspandlcypgdfndyeelkhllsrtnhfekiqi
ipksswsnhdassgvssacpyhgrssffrnvvwlikknsayptikrsynntnqedllvlw
gihhpndaaeqtklyqnpttyisvgtstlnqrlvpeiatrpkvngqsgrmeffwtilkpn
dainfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihp
ltigecpkyvksnrlvlatglrntpqrerrrkkr

    Sequence, based on observed residues (ATOM records): (download) 
    >4mhiI (I:)
pgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilrdcsva
gwllgnpmcdefinvpewsyivekaspandlcypgdfndyeelkhllsrtnhfekiqiip
ksswsnhdassgvssacpyhgrssffrnvvwlikknsayptikrsynntnqedllvlwgi
hhpndaaeqtklyqnpttyisvgtstlnqrlvpeiatrpkvngqsgrmeffwtilkpnda
infesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplt
igecpkyvksnrlvlatglrntp

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >4mhiK (K:)
adpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilrdcs
vagwllgnpmcdefinvpewsyivekaspandlcypgdfndyeelkhllsrtnhfekiqi
ipksswsnhdassgvssacpyhgrssffrnvvwlikknsayptikrsynntnqedllvlw
gihhpndaaeqtklyqnpttyisvgtstlnqrlvpeiatrpkvngqsgrmeffwtilkpn
dainfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihp
ltigecpkyvksnrlvlatglrntpqrerrrkkr

    Sequence, based on observed residues (ATOM records): (download) 
    >4mhiK (K:)
pgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilrdcsva
gwllgnpmcdefinvpewsyivekaspandlcypgdfndyeelkhllsrtnhfekiqiip
ksswsnhdassgvssacpyhgrssffrnvvwlikknsayptikrsynntnqedllvlwgi
hhpndaaeqtklyqnpttyisvgtstlnqrlvpeiatrpkvngqsgrmeffwtilkpnda
infesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplt
igecpkyvksnrlvlatglrntp

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >4mhiM (M:)
adpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilrdcs
vagwllgnpmcdefinvpewsyivekaspandlcypgdfndyeelkhllsrtnhfekiqi
ipksswsnhdassgvssacpyhgrssffrnvvwlikknsayptikrsynntnqedllvlw
gihhpndaaeqtklyqnpttyisvgtstlnqrlvpeiatrpkvngqsgrmeffwtilkpn
dainfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihp
ltigecpkyvksnrlvlatglrntpqrerrrkkr

    Sequence, based on observed residues (ATOM records): (download) 
    >4mhiM (M:)
pgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilrdcsva
gwllgnpmcdefinvpewsyivekaspandlcypgdfndyeelkhllsrtnhfekiqiip
ksswsnhdassgvssacpyhgrssffrnvvwlikknsayptikrsynntnqedllvlwgi
hhpndaaeqtklyqnpttyisvgtstlnqrlvpeiatrpkvngqsgrmeffwtilkpnda
infesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplt
igecpkyvksnrlvlatglrntp

  • Chain 'N':
    No sequence available.

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >4mhiO (O:)
adpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilrdcs
vagwllgnpmcdefinvpewsyivekaspandlcypgdfndyeelkhllsrtnhfekiqi
ipksswsnhdassgvssacpyhgrssffrnvvwlikknsayptikrsynntnqedllvlw
gihhpndaaeqtklyqnpttyisvgtstlnqrlvpeiatrpkvngqsgrmeffwtilkpn
dainfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihp
ltigecpkyvksnrlvlatglrntpqrerrrkkr

    Sequence, based on observed residues (ATOM records): (download) 
    >4mhiO (O:)
pgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilrdcsva
gwllgnpmcdefinvpewsyivekaspandlcypgdfndyeelkhllsrtnhfekiqiip
ksswsnhdassgvssacpyhgrssffrnvvwlikknsayptikrsynntnqedllvlwgi
hhpndaaeqtklyqnpttyisvgtstlnqrlvpeiatrpkvngqsgrmeffwtilkpnda
infesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplt
igecpkyvksnrlvlatglrntp

  • Chain 'P':
    No sequence available.

  • Chain 'Q':
    Sequence, based on SEQRES records: (download) 
    >4mhiQ (Q:)
adpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilrdcs
vagwllgnpmcdefinvpewsyivekaspandlcypgdfndyeelkhllsrtnhfekiqi
ipksswsnhdassgvssacpyhgrssffrnvvwlikknsayptikrsynntnqedllvlw
gihhpndaaeqtklyqnpttyisvgtstlnqrlvpeiatrpkvngqsgrmeffwtilkpn
dainfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihp
ltigecpkyvksnrlvlatglrntpqrerrrkkr

    Sequence, based on observed residues (ATOM records): (download) 
    >4mhiQ (Q:)
pgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilrdcsva
gwllgnpmcdefinvpewsyivekaspandlcypgdfndyeelkhllsrtnhfekiqiip
ksswsnhdassgvssacpyhgrssffrnvvwlikknsayptikrsynntnqedllvlwgi
hhpndaaeqtklyqnpttyisvgtstlnqrlvpeiatrpkvngqsgrmeffwtilkpnda
infesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplt
igecpkyvksnrlvlatglrntp

  • Chain 'R':
    No sequence available.