PDB entry 4kdq
View 4kdq on RCSB PDB site
Description: Crystal structure of the hemagglutinin of A/Xinjiang/1/2006 virus
Class: viral protein
Keywords: homotrimer, virus attachment and membrane fusion, VIRAL PROTEIN
Deposited on
2013-04-25, released
2013-07-24
The last revision prior to the SCOPe 2.07 freeze date was dated
2013-09-04, with a file datestamp of
2013-08-30.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.235
AEROSPACI score: 0.27
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:577543]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4kdqa_ - Chain 'B':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:279728]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4kdqb_ - Chain 'C':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:577543]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4kdqc_ - Chain 'D':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:279728]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4kdqd_ - Chain 'E':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:577543]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4kdqe_ - Chain 'F':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:279728]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4kdqf_ - Heterogens: NAG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>4kdqA (A:)
sdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdeflnvpewsyivekinpvndlcypgnfndyeelkhllsrinhfekiqiipk
sswsdheassgvssacpyqgrssffrnvvwlikknntyptikrsynntnqedllvlwgih
hpndaaeqtrlyqnpttyisvgtstlnqrlvpklatrskvngqsgrmeffwtilkpndai
nfesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihplti
gecpkyvksnrlvlatglrns
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>4kdqB (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhrcdnecmesvrngtydypqyse
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>4kdqC (C:)
sdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdeflnvpewsyivekinpvndlcypgnfndyeelkhllsrinhfekiqiipk
sswsdheassgvssacpyqgrssffrnvvwlikknntyptikrsynntnqedllvlwgih
hpndaaeqtrlyqnpttyisvgtstlnqrlvpklatrskvngqsgrmeffwtilkpndai
nfesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihplti
gecpkyvksnrlvlatglrns
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>4kdqD (D:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhrcdnecmesvrngtydypqyse
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>4kdqE (E:)
sdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdeflnvpewsyivekinpvndlcypgnfndyeelkhllsrinhfekiqiipk
sswsdheassgvssacpyqgrssffrnvvwlikknntyptikrsynntnqedllvlwgih
hpndaaeqtrlyqnpttyisvgtstlnqrlvpklatrskvngqsgrmeffwtilkpndai
nfesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihplti
gecpkyvksnrlvlatglrns
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>4kdqF (F:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhrcdnecmesvrngtydypqyse