PDB entry 4i7u

View 4i7u on RCSB PDB site
Description: Dihydrodipicolinate Synthase of Agrobacterium tumefaciens
Class: biosynthetic protein
Keywords: TIM barrel, lysine biosynthesis, Cytosol, BIOSYNTHETIC PROTEIN
Deposited on 2012-11-30, released 2013-12-04
The last revision prior to the SCOPe 2.07 freeze date was dated 2013-12-04, with a file datestamp of 2013-11-29.
Experiment type: XRAY
Resolution: 1.55 Å
R-factor: 0.19
AEROSPACI score: 0.52 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dihydrodipicolinate synthase
    Species: Agrobacterium sp. [TaxId:861208]
    Gene: AGROH133_05014, dapA
    Database cross-references and differences (RAF-indexed):
    • Uniprot F0L8Z6 (14-307)
      • see remark 999 (203)
      • see remark 999 (276)
    Domains in SCOPe 2.07: d4i7ua_
  • Chain 'B':
    Compound: Dihydrodipicolinate synthase
    Species: Agrobacterium sp. [TaxId:861208]
    Gene: AGROH133_05014, dapA
    Database cross-references and differences (RAF-indexed):
    • Uniprot F0L8Z6 (14-307)
      • expression tag (4-13)
      • see remark 999 (203)
      • see remark 999 (276)
    Domains in SCOPe 2.07: d4i7ub1, d4i7ub2
  • Chain 'C':
    Compound: Dihydrodipicolinate synthase
    Species: Agrobacterium sp. [TaxId:861208]
    Gene: AGROH133_05014, dapA
    Database cross-references and differences (RAF-indexed):
    • Uniprot F0L8Z6 (14-307)
      • expression tag (13)
      • see remark 999 (203)
      • see remark 999 (276)
    Domains in SCOPe 2.07: d4i7uc1, d4i7uc2
  • Chain 'D':
    Compound: Dihydrodipicolinate synthase
    Species: Agrobacterium sp. [TaxId:861208]
    Gene: AGROH133_05014, dapA
    Database cross-references and differences (RAF-indexed):
    • Uniprot F0L8Z6 (14-307)
      • expression tag (13)
      • see remark 999 (203)
      • see remark 999 (276)
    Domains in SCOPe 2.07: d4i7ud1, d4i7ud2
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4i7uA (A:)
mahhhhhhvdddekmfkgsipalitpftdngavdeqafaahvewqiaegsnglvpvgttg
esptlshdehkrvvelcievaakrvpviagagsnntdeaielalhaqdagadallvvtpy
ynkptqkglfahfsavaeavklpiviynipprsvvdmspetmgalvkahknivgvkdatg
kldrvseqriscgkdfiqlsgedstalgfnahggvgcisvsanvaprlcsefqaamlagd
yakaleyqdrlmplhraifmepgvcgtkyalsktrgcnrkvrsplmstlepateaaidaa
lkhaglmn

    Sequence, based on observed residues (ATOM records): (download) 
    >4i7uA (A:)
mfkgsipalitpftdngavdeqafaahvewqiaegsnglvpvgttgesptlshdehkrvv
elcievaakrvpviagagsnntdeaielalhaqdagadallvvtpyynkptqkglfahfs
avaeavklpiviynipprsvvdmspetmgalvkahknivgvkdatgkldrvseqriscgk
dfiqlsgedstalgfnahggvgcisvsanvaprlcsefqaamlagdyakaleyqdrlmpl
hraifmepgvcgtkyalsktrgcnrkvrsplmstlepateaaidaalkhaglmn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4i7uB (B:)
mahhhhhhvdddekmfkgsipalitpftdngavdeqafaahvewqiaegsnglvpvgttg
esptlshdehkrvvelcievaakrvpviagagsnntdeaielalhaqdagadallvvtpy
ynkptqkglfahfsavaeavklpiviynipprsvvdmspetmgalvkahknivgvkdatg
kldrvseqriscgkdfiqlsgedstalgfnahggvgcisvsanvaprlcsefqaamlagd
yakaleyqdrlmplhraifmepgvcgtkyalsktrgcnrkvrsplmstlepateaaidaa
lkhaglmn

    Sequence, based on observed residues (ATOM records): (download) 
    >4i7uB (B:)
hhhhvdddekmfkgsipalitpftdngavdeqafaahvewqiaegsnglvpvgttgespt
lshdehkrvvelcievaakrvpviagagsnntdeaielalhaqdagadallvvtpyynkp
tqkglfahfsavaeavklpiviynipprsvvdmspetmgalvkahknivgvkdatgkldr
vseqriscgkdfiqlsgedstalgfnahggvgcisvsanvaprlcsefqaamlagdyaka
leyqdrlmplhraifmepgvcgtkyalsktrgcnrkvrsplmstlepateaaidaalkha
glmn

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4i7uC (C:)
mahhhhhhvdddekmfkgsipalitpftdngavdeqafaahvewqiaegsnglvpvgttg
esptlshdehkrvvelcievaakrvpviagagsnntdeaielalhaqdagadallvvtpy
ynkptqkglfahfsavaeavklpiviynipprsvvdmspetmgalvkahknivgvkdatg
kldrvseqriscgkdfiqlsgedstalgfnahggvgcisvsanvaprlcsefqaamlagd
yakaleyqdrlmplhraifmepgvcgtkyalsktrgcnrkvrsplmstlepateaaidaa
lkhaglmn

    Sequence, based on observed residues (ATOM records): (download) 
    >4i7uC (C:)
kmfkgsipalitpftdngavdeqafaahvewqiaegsnglvpvgttgesptlshdehkrv
velcievaakrvpviagagsnntdeaielalhaqdagadallvvtpyynkptqkglfahf
savaeavklpiviynipprsvvdmspetmgalvkahknivgvkdatgkldrvseqriscg
kdfiqlsgedstalgfnahggvgcisvsanvaprlcsefqaamlagdyakaleyqdrlmp
lhraifmepgvcgtkyalsktrgcnrkvrsplmstlepateaaidaalkhaglmn

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4i7uD (D:)
mahhhhhhvdddekmfkgsipalitpftdngavdeqafaahvewqiaegsnglvpvgttg
esptlshdehkrvvelcievaakrvpviagagsnntdeaielalhaqdagadallvvtpy
ynkptqkglfahfsavaeavklpiviynipprsvvdmspetmgalvkahknivgvkdatg
kldrvseqriscgkdfiqlsgedstalgfnahggvgcisvsanvaprlcsefqaamlagd
yakaleyqdrlmplhraifmepgvcgtkyalsktrgcnrkvrsplmstlepateaaidaa
lkhaglmn

    Sequence, based on observed residues (ATOM records): (download) 
    >4i7uD (D:)
kmfkgsipalitpftdngavdeqafaahvewqiaegsnglvpvgttgesptlshdehkrv
velcievaakrvpviagagsnntdeaielalhaqdagadallvvtpyynkptqkglfahf
savaeavklpiviynipprsvvdmspetmgalvkahknivgvkdatgkldrvseqriscg
kdfiqlsgedstalgfnahggvgcisvsanvaprlcsefqaamlagdyakaleyqdrlmp
lhraifmepgvcgtkyalsktrgcnrkvrsplmstlepateaaidaalkhaglmn