PDB entry 4dfp

View 4dfp on RCSB PDB site
Description: Crystal structure of the large fragment of DNA Polymerase I from Thermus aqauticus in a ternary complex with 7-(aminopentinyl)-7-deaza-dGTP
Class: transferase/DNA
Keywords: DNA Polymerase, TRANSFERASE-DNA complex
Deposited on 2012-01-24, released 2012-05-16
The last revision prior to the SCOPe 2.03 freeze date was dated 2012-08-08, with a file datestamp of 2012-08-03.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.187
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase I, thermostable
    Species: Thermus aquaticus [TaxId:271]
    Gene: polA, pol1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d4dfpa1, d4dfpa2
  • Chain 'B':
    Compound: DNA (5'-d(*gp*ap*cp*cp*ap*cp*gp*gp*cp*gp*cp*(doc))-3')
  • Chain 'C':
    Compound: 5'-d(AAACGGCGCCGTGGTC)-3'
  • Heterogens: MG, EDO, FMT, 0L7, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4dfpA (A:)
aleeapwpppegafvgfvlsrkepmwadllalaaarggrvhrapepykalrdlkeargll
akdlsvlalreglglppgddpmllaylldpsnttpegvarryggewteeageraalserl
fanlwgrlegeerllwlyreverplsavlahmeatgvrldvaylralslevaeeiarlea
evfrlaghpfnlnsrdqlervlfdelglpaigktektgkrstsaavlealreahpiveki
lqyreltklkstyidplpdlihprtgrlhtrfnqtatatgrlsssdpnlqnipvrtplgq
rirrafiaeegwllvaldysqielrvlahlsgdenlirvfqegrdihtetaswmfgvpre
avdplmrraaktinfgvlygmsahrlsqelaipyeeaqafieryfqsfpkvrawiektle
egrrrgyvetlfgrrryvpdlearvksvreaaermafnmpvqgtaadlmklamvklfprl
eemgarmllqvhdelvleapkeraeavarlakevmegvyplavplevevgigedwlsake

    Sequence, based on observed residues (ATOM records): (download) 
    >4dfpA (A:)
leeapwpppegafvgfvlsrkepmwadllalaaarggrvhrapepykalrdlkearglla
kdlsvlalreglglppgddpmllaylldpsnttpegvarryggewteeageraalserlf
anlwgrlegeerllwlyreverplsavlahmeatgvrldvaylralslevaeeiarleae
vfrlaghpfnlnsrdqlervlfdelglpaigktektgkrstsaavlealreahpivekil
qyreltklkstyidplpdlihprtgrlhtrfnqtatatgrlsssdpnlqnipvrtplgqr
irrafiaeegwllvaldysqielrvlahlsgdenlirvfqegrdihtetaswmfgvprea
vdplmrraaktinfgvlygmsahrlsqelaipyeeaqafieryfqsfpkvrawiektlee
grrrgyvetlfgrrryvpdlearvksvreaaermafnmpvqgtaadlmklamvklfprle
emgarmllqvhdelvleapkeraeavarlakevmegvyplavplevevgigedwlsake

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.