PDB entry 3vkv

View 3vkv on RCSB PDB site
Description: Complex structure of Lactobacillus casei lactate dehydrogenase with fructose-1,6-bisphosphate
Class: oxidoreductase
Keywords: Rossmann Fold, Dehydrogenase, NADH Binding, OXIDOREDUCTASE
Deposited on 2011-11-22, released 2011-12-21
Made obsolete by 6j9t on 2019-02-06

The last revision prior to the SCOPe 2.03 freeze date was dated 2011-12-21, with a file datestamp of 2011-12-16.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.2
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: l-lactate dehydrogenase
    Species: Lactobacillus casei [TaxId:1582]
    Gene: LDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3vkva1, d3vkva2
  • Chain 'B':
    Compound: l-lactate dehydrogenase
    Species: Lactobacillus casei [TaxId:1582]
    Gene: LDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3vkvb1, d3vkvb2
  • Chain 'C':
    Compound: l-lactate dehydrogenase
    Species: Lactobacillus casei [TaxId:1582]
    Gene: LDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3vkvc1, d3vkvc2
  • Chain 'D':
    Compound: l-lactate dehydrogenase
    Species: Lactobacillus casei [TaxId:1582]
    Gene: LDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3vkvd1, d3vkvd2
  • Chain 'E':
    Compound: l-lactate dehydrogenase
    Species: Lactobacillus casei [TaxId:1582]
    Gene: LDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3vkve1, d3vkve2
  • Chain 'F':
    Compound: l-lactate dehydrogenase
    Species: Lactobacillus casei [TaxId:1582]
    Gene: LDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3vkvf1, d3vkvf2
  • Heterogens: SO4, FBP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3vkvA (A:)
masitdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpf
tspkkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngi
flvaanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimge
hgdtefpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygia
talariskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheee
smqksasqlkkvltdafakndietrq

    Sequence, based on observed residues (ATOM records): (download) 
    >3vkvA (A:)
dkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpftspkk
iysaeysdakdadlvvitagaptrldlvnknlkilksivdpivdsgfngiflvaanpvdi
ltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimgehgdtefpvws
haniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygiatalariskai
lndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheeesmqksasqlk
kvltdaf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3vkvB (B:)
masitdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpf
tspkkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngi
flvaanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimge
hgdtefpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygia
talariskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheee
smqksasqlkkvltdafakndietrq

    Sequence, based on observed residues (ATOM records): (download) 
    >3vkvB (B:)
dkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpftspkk
iysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngiflvaa
npvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimgehgdte
fpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygiatalar
iskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheeesmqks
asqlkkvltdafa

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3vkvC (C:)
masitdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpf
tspkkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngi
flvaanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimge
hgdtefpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygia
talariskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheee
smqksasqlkkvltdafakndietrq

    Sequence, based on observed residues (ATOM records): (download) 
    >3vkvC (C:)
kdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpftspkki
ysaeysdakdadlvvitagknlkilksivdpivdsgfngiflvaanpvdiltyatwklsg
fpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimgehgdtefpvwshaniggvtia
ewvkahpeikedklvkmfedvrdaayeiiklkgatfygiatalariskailndenavlpl
svymdgqyglndiyigtpavinrngiqnileipltdheeesmqksasqlkkvltda

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3vkvD (D:)
masitdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpf
tspkkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngi
flvaanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimge
hgdtefpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygia
talariskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheee
smqksasqlkkvltdafakndietrq

    Sequence, based on observed residues (ATOM records): (download) 
    >3vkvD (D:)
kdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpftspkki
ysaeysdakdadlvvitagaptrldlvnknlkilksivdpivdsgfngiflvaanpvdil
tyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimgehgdtefpvwsh
aniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygiatalariskail
ndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheeesmqksasqlkk
vltdaf

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3vkvE (E:)
masitdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpf
tspkkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngi
flvaanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimge
hgdtefpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygia
talariskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheee
smqksasqlkkvltdafakndietrq

    Sequence, based on observed residues (ATOM records): (download) 
    >3vkvE (E:)
kdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpftspkki
ysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngiflvaan
pvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimgehgdtef
pvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygiatalari
skailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheeesmqksa
sqlkkvltdaf

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3vkvF (F:)
masitdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpf
tspkkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngi
flvaanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimge
hgdtefpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygia
talariskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheee
smqksasqlkkvltdafakndietrq

    Sequence, based on observed residues (ATOM records): (download) 
    >3vkvF (F:)
kdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpftspkki
ysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngiflvaan
pvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimgehgdtef
pvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygiatalari
skailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheeesmqksa
sqlkkvltdafa