PDB entry 3t4c

View 3t4c on RCSB PDB site
Description: Crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from Burkholderia ambifaria
Class: transferase
Keywords: SSGCID, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, TRANSFERASE
Deposited on 2011-07-25, released 2011-08-17
The last revision prior to the SCOPe 2.07 freeze date was dated 2013-10-09, with a file datestamp of 2013-10-04.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: 0.172
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 2-dehydro-3-deoxyphosphooctonate aldolase 1
    Species: Burkholderia ambifaria [TaxId:398577]
    Gene: kdsA1, BamMC406_2018
    Database cross-references and differences (RAF-indexed):
    • Uniprot B1YT10 (4-End)
      • expression tag (2-3)
    Domains in SCOPe 2.07: d3t4ca1, d3t4ca2
  • Chain 'B':
    Compound: 2-dehydro-3-deoxyphosphooctonate aldolase 1
    Species: Burkholderia ambifaria [TaxId:398577]
    Gene: kdsA1, BamMC406_2018
    Database cross-references and differences (RAF-indexed):
    • Uniprot B1YT10 (4-End)
      • expression tag (3)
    Domains in SCOPe 2.07: d3t4cb1, d3t4cb2
  • Chain 'C':
    Compound: 2-dehydro-3-deoxyphosphooctonate aldolase 1
    Species: Burkholderia ambifaria [TaxId:398577]
    Gene: kdsA1, BamMC406_2018
    Database cross-references and differences (RAF-indexed):
    • Uniprot B1YT10 (4-End)
      • expression tag (2-3)
    Domains in SCOPe 2.07: d3t4cc1, d3t4cc2
  • Chain 'D':
    Compound: 2-dehydro-3-deoxyphosphooctonate aldolase 1
    Species: Burkholderia ambifaria [TaxId:398577]
    Gene: kdsA1, BamMC406_2018
    Database cross-references and differences (RAF-indexed):
    • Uniprot B1YT10 (4-End)
      • expression tag (3)
    Domains in SCOPe 2.07: d3t4cd1, d3t4cd2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3t4cA (A:)
gpgsmklydfevgldqpffliagtcvveseqmtidtagrlkeicaklnvpfiykssydka
nrssgksfrglgmdeglrilgevkrqlglpvltdvhsideieqvasvvdvlqtpaflcrq
tdfihacarsgkpvnikkgqflaphdmknvidkareaareaglsedrfmacergvsfgyn
nlvsdmrslaimretsapvvfdathsvqlpggqgtssggqrefvpvlaraavatgvaglf
methpnpaeaksdgpnavplnrmgalletlvtldqavkrhpflendfn

    Sequence, based on observed residues (ATOM records): (download) 
    >3t4cA (A:)
gsmklydfevgldqpffliagtcvveseqmtidtagrlkeicaklnvpfiykssydkmde
glrilgevkrqlglpvltdvhsideieqvasvvdvlqtpaflcrqtdfihacarsgkpvn
ikkgqflaphdmknvidkareaareaglsedrfmacergvsfgynnlvsdmrslaimret
sapvvfdathsvqlpggqrefvpvlaraavatgvaglfmethpnpaeaksdgpnavplnr
mgalletlvtldqavkrhpflend

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3t4cB (B:)
gpgsmklydfevgldqpffliagtcvveseqmtidtagrlkeicaklnvpfiykssydka
nrssgksfrglgmdeglrilgevkrqlglpvltdvhsideieqvasvvdvlqtpaflcrq
tdfihacarsgkpvnikkgqflaphdmknvidkareaareaglsedrfmacergvsfgyn
nlvsdmrslaimretsapvvfdathsvqlpggqgtssggqrefvpvlaraavatgvaglf
methpnpaeaksdgpnavplnrmgalletlvtldqavkrhpflendfn

    Sequence, based on observed residues (ATOM records): (download) 
    >3t4cB (B:)
smklydfevgldqpffliagtcvveseqmtidtagrlkeicaklnvpfiykssydmdegl
rilgevkrqlglpvltdvhsideieqvasvvdvlqtpaflcrqtdfihacarsgkpvnik
kgqflaphdmknvidkareaareaglsedrfmacergvsfgynnlvsdmrslaimretsa
pvvfdathsvqlpgqrefvpvlaraavatgvaglfmethpnpaeaksdgpnavplnrmga
lletlvtldqavkrhpflendf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3t4cC (C:)
gpgsmklydfevgldqpffliagtcvveseqmtidtagrlkeicaklnvpfiykssydka
nrssgksfrglgmdeglrilgevkrqlglpvltdvhsideieqvasvvdvlqtpaflcrq
tdfihacarsgkpvnikkgqflaphdmknvidkareaareaglsedrfmacergvsfgyn
nlvsdmrslaimretsapvvfdathsvqlpggqgtssggqrefvpvlaraavatgvaglf
methpnpaeaksdgpnavplnrmgalletlvtldqavkrhpflendfn

    Sequence, based on observed residues (ATOM records): (download) 
    >3t4cC (C:)
gsmklydfevgldqpffliagtcvveseqmtidtagrlkeicaklnvpfiykssymdegl
rilgevkrqlglpvltdvhsideieqvasvvdvlqtpaflcrqtdfihacarsgkpvnik
kgqflaphdmknvidkareaareaglsedrfmacergvsfgynnlvsdmrslaimretsa
pvvfdathsvqlpggqrefvpvlaraavatgvaglfmethpnpaeaksdgpnavplnrmg
alletlvtldqavkrhpflend

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3t4cD (D:)
gpgsmklydfevgldqpffliagtcvveseqmtidtagrlkeicaklnvpfiykssydka
nrssgksfrglgmdeglrilgevkrqlglpvltdvhsideieqvasvvdvlqtpaflcrq
tdfihacarsgkpvnikkgqflaphdmknvidkareaareaglsedrfmacergvsfgyn
nlvsdmrslaimretsapvvfdathsvqlpggqgtssggqrefvpvlaraavatgvaglf
methpnpaeaksdgpnavplnrmgalletlvtldqavkrhpflendfn

    Sequence, based on observed residues (ATOM records): (download) 
    >3t4cD (D:)
smklydfevgldqpffliagtcvveseqmtidtagrlkeicaklnvpfiykssmdeglri
lgevkrqlglpvltdvhsideieqvasvvdvlqtpaflcrqtdfihacarsgkpvnikkg
qflaphdmknvidkareaareaglsedrfmacergvsfgynnlvsdmrslaimretsapv
vfdathsvqlpgqrefvpvlaraavatgvaglfmethpnpaeaksdgpnavplnrmgall
etlvtldqavkrhpflend