PDB entry 3q86
View 3q86 on RCSB PDB site
Description: Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with GTP
Class: transferase
Keywords: Ferridoxin fold, alpha-beta protein family, Nucleoside diphosphate kinases (NDKs), transfer, a gamma phosphate, nucleoside triphosphates, nucleoside diphosphate, Nucleotide binding Magnesium, Metal binding, Phosphorylation, TRANSFERASE
Deposited on
2011-01-06, released
2011-07-27
The last revision prior to the SCOPe 2.03 freeze date was dated
2013-06-26, with a file datestamp of
2013-06-21.
Experiment type: XRAY
Resolution: 2.38 Å
R-factor: 0.169
AEROSPACI score: 0.39
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Nucleoside diphosphate kinase
Species: Staphylococcus aureus subsp. aureus [TaxId:93062]
Gene: ndk, SACOL1509
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3q86a_ - Chain 'B':
Compound: Nucleoside diphosphate kinase
Species: Staphylococcus aureus subsp. aureus [TaxId:93062]
Gene: ndk, SACOL1509
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3q86b_ - Heterogens: GTP, MG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3q86A (A:)
mertflmikpdavqrnligevisrierkglklvggklmqvpmelaethygehqgkpfynd
lisfitsapvfamvvegedavnvsrhiigstnpseaspgsirgdlgltvgrniihgsdsl
esaereinlwfneneitsyasprdawlyelehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3q86A (A:)
mertflmikpdavqrnligevisrierkglklvggklmqvpmelaethygehqgkpfynd
lisfitsapvfamvvegedavnvsrhiigstnpseaspgsirgdlgltvgrniihgsdsl
esaereinlwfneneitsyasprdawlye
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3q86B (B:)
mertflmikpdavqrnligevisrierkglklvggklmqvpmelaethygehqgkpfynd
lisfitsapvfamvvegedavnvsrhiigstnpseaspgsirgdlgltvgrniihgsdsl
esaereinlwfneneitsyasprdawlyelehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3q86B (B:)
mertflmikpdavqrnligevisrierkglklvggklmqvpmelaethygehqgkpfynd
lisfitsapvfamvvegedavnvsrhiigstnpseaspgsirgdlgltvgrniihgsdsl
esaereinlwfneneitsyasprdawlye