PDB entry 3pd8

View 3pd8 on RCSB PDB site
Description: X-ray structure of the ligand-binding core of GluA2 in complex with (S)-7-HPCA at 2.5 A resolution
Class: membrane protein
Keywords: ionotropic glutamate receptor GluA2, ligand-binding core, agonist complex, membrane protein
Deposited on 2010-10-22, released 2010-12-29
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-08-23, with a file datestamp of 2017-08-18.
Experiment type: XRAY
Resolution: 2.48 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glutamate receptor 2
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Glur2, Gria2, RAT
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19491 (Start-115)
      • linker (116-117)
    • Uniprot P19491 (118-260)
    Domains in SCOPe 2.07: d3pd8a_
  • Chain 'B':
    Compound: Glutamate receptor 2
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Glur2, Gria2, RAT
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19491 (1-115)
      • expression tag (0)
      • linker (116-117)
    • Uniprot P19491 (118-260)
    Domains in SCOPe 2.07: d3pd8b1, d3pd8b2
  • Chain 'C':
    Compound: Glutamate receptor 2
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Glur2, Gria2, RAT
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19491 (1-115)
      • expression tag (0)
      • linker (116-117)
    • Uniprot P19491 (118-End)
    Domains in SCOPe 2.07: d3pd8c1, d3pd8c2
  • Heterogens: ZN, HA7, GOL, ACY, CAC, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3pd8A (A:)
anktvvvttilespyvmmkknhemlegneryegycvdlaaeiakhcgfkykltivgdgky
gardadtkiwngmvgelvygkadiaiapltitlvreevidfskpfmslgisimikkgtpi
esaedlskqteiaygtldsgstkeffrrskiavfdkmwtymrsaepsvfvrttaegvarv
rkskgkyayllestmneyieqrkpcdtmkvggnldskgygiatpkgsslgnavnlavlkl
neqglldklknkwwydkgecg

    Sequence, based on observed residues (ATOM records): (download) 
    >3pd8A (A:)
ktvvvttilespyvmmkknhemlegneryegycvdlaaeiakhcgfkykltivgdgkyga
rdadtkiwngmvgelvygkadiaiapltitlvreevidfskpfmslgisimikkgtpies
aedlskqteiaygtldsgstkeffrrskiavfdkmwtymrsaepsvfvrttaegvarvrk
skgkyayllestmneyieqrkpcdtmkvggnldskgygiatpkgsslgnavnlavlklne
qglldklknkwwydkgecg

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3pd8B (B:)
anktvvvttilespyvmmkknhemlegneryegycvdlaaeiakhcgfkykltivgdgky
gardadtkiwngmvgelvygkadiaiapltitlvreevidfskpfmslgisimikkgtpi
esaedlskqteiaygtldsgstkeffrrskiavfdkmwtymrsaepsvfvrttaegvarv
rkskgkyayllestmneyieqrkpcdtmkvggnldskgygiatpkgsslgnavnlavlkl
neqglldklknkwwydkgecg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3pd8C (C:)
anktvvvttilespyvmmkknhemlegneryegycvdlaaeiakhcgfkykltivgdgky
gardadtkiwngmvgelvygkadiaiapltitlvreevidfskpfmslgisimikkgtpi
esaedlskqteiaygtldsgstkeffrrskiavfdkmwtymrsaepsvfvrttaegvarv
rkskgkyayllestmneyieqrkpcdtmkvggnldskgygiatpkgsslgnavnlavlkl
neqglldklknkwwydkgecg

    Sequence, based on observed residues (ATOM records): (download) 
    >3pd8C (C:)
anktvvvttilespyvmmkknhemlegneryegycvdlaaeiakhcgfkykltivgdgky
gardadtkiwngmvgelvygkadiaiapltitlvreevidfskpfmslgisimikkgtpi
esaedlskqteiaygtldsgstkeffrrskiavfdkmwtymrsaepsvfvrttaegvarv
rkskgkyayllestmneyieqrkpcdtmkvggnldskgygiatpkgsslgnavnlavlkl
neqglldklknkwwydkgec