PDB entry 3m6s

View 3m6s on RCSB PDB site
Description: Crystal structure of H1N1pdm Hemagglutinin
Class: viral protein
Keywords: Influenza virus, Hemagglutinin, pandemic, Envelope protein, Fusion protein, Host cell membrane, Host membrane, Membrane, Transmembrane, Virion, VIRAL PROTEIN
Deposited on 2010-03-16, released 2010-03-31
The last revision prior to the SCOPe 2.07 freeze date was dated 2014-03-19, with a file datestamp of 2014-03-14.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.231
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:650110]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot C5MV42 (4-End)
      • expression tag (1-3)
    Domains in SCOPe 2.07: d3m6sa1, d3m6sa2
  • Chain 'B':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:650110]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3m6sb_
  • Chain 'C':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:650110]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot C5MV42 (4-End)
      • expression tag (3)
    Domains in SCOPe 2.07: d3m6sc1, d3m6sc2
  • Chain 'D':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:650110]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3m6sd_
  • Chain 'E':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:650110]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot C5MV42 (4-End)
      • expression tag (3)
    Domains in SCOPe 2.07: d3m6se1, d3m6se2
  • Chain 'F':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:650110]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3m6sf_
  • Chain 'G':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:650110]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3m6sg_
  • Chain 'H':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:650110]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3m6sh_
  • Chain 'I':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:650110]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot C5MV42 (4-End)
      • expression tag (3)
    Domains in SCOPe 2.07: d3m6si1, d3m6si2
  • Chain 'J':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:650110]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3m6sj_
  • Chain 'K':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:650110]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3m6sk_
  • Chain 'L':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:650110]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3m6sl_
  • Heterogens: NAG

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3m6sA (A:)
adpgdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcn
iagwilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfei
fpktsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvl
wgihhpstsadqqslyqnadayvfvgtskyskkfkpeiairpkvrdqegrmnyywtlvep
gdkitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnih
pitigkcpkyvkstklrlatglrnvpsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >3m6sA (A:)
dpgdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcni
agwilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfeif
pktsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlw
gihhpstsadqqslyqnadayvfvgtskyskkfkpeiairpkvrdqegrmnyywtlvepg
dkitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihp
itigkcpkyvkstklrlatglrnvp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3m6sB (B:)
glfgaiagfieggwtgmvdgwygyhhqneqgsgyaadlkstqnaideitnkvnsviekmn
tqftavgkefnhlekrienlnkkiddgfldiwtynaellvllenertldyhdsnvknlye
kvrsqlknnakeigngcfefyhkcdntcmesvkngtydypkyseeaklnreeidsgrlvp
r

    Sequence, based on observed residues (ATOM records): (download) 
    >3m6sB (B:)
lfgaiagfieggwtgmvdgwygyhhqneqgsgyaadlkstqnaideitnkvnsviekmnt
qftavgkefnhlekrienlnkkiddgfldiwtynaellvllenertldyhdsnvknlyek
vrsqlknnakeigngcfefyhkcdntcmesvkngtydypkyseeaklnr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3m6sC (C:)
adpgdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcn
iagwilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfei
fpktsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvl
wgihhpstsadqqslyqnadayvfvgtskyskkfkpeiairpkvrdqegrmnyywtlvep
gdkitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnih
pitigkcpkyvkstklrlatglrnvpsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >3m6sC (C:)
gdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniag
wilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfeifpk
tsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgi
hhpstsadqqslyqnadayvfvgtskyskkfkpeiairpkvrdqegrmnyywtlvepgdk
itfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpit
igkcpkyvkstklrlatglrnvp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3m6sD (D:)
glfgaiagfieggwtgmvdgwygyhhqneqgsgyaadlkstqnaideitnkvnsviekmn
tqftavgkefnhlekrienlnkkiddgfldiwtynaellvllenertldyhdsnvknlye
kvrsqlknnakeigngcfefyhkcdntcmesvkngtydypkyseeaklnreeidsgrlvp
r

    Sequence, based on observed residues (ATOM records): (download) 
    >3m6sD (D:)
lfgaiagfieggwtgmvdgwygyhhqneqgsgyaadlkstqnaideitnkvnsviekmnt
qftavgkefnhlekrienlnkkiddgfldiwtynaellvllenertldyhdsnvknlyek
vrsqlknnakeigngcfefyhkcdntcmesvkngtydypkyseeaklnree

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3m6sE (E:)
adpgdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcn
iagwilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfei
fpktsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvl
wgihhpstsadqqslyqnadayvfvgtskyskkfkpeiairpkvrdqegrmnyywtlvep
gdkitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnih
pitigkcpkyvkstklrlatglrnvpsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >3m6sE (E:)
gdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniag
wilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfeifpk
tsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgi
hhpstsadqqslyqnadayvfvgtskyskkfkpeiairpkvrdqegrmnyywtlvepgdk
itfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpit
igkcpkyvkstklrlatglrnvp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3m6sF (F:)
glfgaiagfieggwtgmvdgwygyhhqneqgsgyaadlkstqnaideitnkvnsviekmn
tqftavgkefnhlekrienlnkkiddgfldiwtynaellvllenertldyhdsnvknlye
kvrsqlknnakeigngcfefyhkcdntcmesvkngtydypkyseeaklnreeidsgrlvp
r

    Sequence, based on observed residues (ATOM records): (download) 
    >3m6sF (F:)
lfgaiagfieggwtgmvdgwygyhhqneqgsgyaadlkstqnaideitnkvnsviekmnt
qftavgkefnhlekrienlnkkiddgfldiwtynaellvllenertldyhdsnvknlyek
vrsqlknnakeigngcfefyhkcdntcmesvkngtydypkyseeaklnree

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3m6sG (G:)
adpgdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcn
iagwilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfei
fpktsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvl
wgihhpstsadqqslyqnadayvfvgtskyskkfkpeiairpkvrdqegrmnyywtlvep
gdkitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnih
pitigkcpkyvkstklrlatglrnvpsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >3m6sG (G:)
dtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniagw
ilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfeifpkt
sswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgih
hpstsadqqslyqnadayvfvgtskyskkfkpeiairpkvrdqegrmnyywtlvepgdki
tfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpiti
gkcpkyvkstklrlatglrnvp

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3m6sH (H:)
glfgaiagfieggwtgmvdgwygyhhqneqgsgyaadlkstqnaideitnkvnsviekmn
tqftavgkefnhlekrienlnkkiddgfldiwtynaellvllenertldyhdsnvknlye
kvrsqlknnakeigngcfefyhkcdntcmesvkngtydypkyseeaklnreeidsgrlvp
r

    Sequence, based on observed residues (ATOM records): (download) 
    >3m6sH (H:)
lfgaiagfieggwtgmvdgwygyhhqneqgsgyaadlkstqnaideitnkvnsviekmnt
qftavgkefnhlekrienlnkkiddgfldiwtynaellvllenertldyhdsnvknlyek
vrsqlknnakeigngcfefyhkcdntcmesvkngtydypkyseeaklnre

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >3m6sI (I:)
adpgdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcn
iagwilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfei
fpktsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvl
wgihhpstsadqqslyqnadayvfvgtskyskkfkpeiairpkvrdqegrmnyywtlvep
gdkitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnih
pitigkcpkyvkstklrlatglrnvpsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >3m6sI (I:)
gdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniag
wilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfeifpk
tsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgi
hhpstsadqqslyqnadayvfvgtskyskkfkpeiairpkvrdqegrmnyywtlvepgdk
itfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpit
igkcpkyvkstklrlatglrnv

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >3m6sJ (J:)
glfgaiagfieggwtgmvdgwygyhhqneqgsgyaadlkstqnaideitnkvnsviekmn
tqftavgkefnhlekrienlnkkiddgfldiwtynaellvllenertldyhdsnvknlye
kvrsqlknnakeigngcfefyhkcdntcmesvkngtydypkyseeaklnreeidsgrlvp
r

    Sequence, based on observed residues (ATOM records): (download) 
    >3m6sJ (J:)
lfgaiagfieggwtgmvdgwygyhhqneqgsgyaadlkstqnaideitnkvnsviekmnt
qftavgkefnhlekrienlnkkiddgfldiwtynaellvllenertldyhdsnvknlyek
vrsqlknnakeigngcfefyhkcdntcmesvkngtydypkyseeaklnre

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >3m6sK (K:)
adpgdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcn
iagwilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfei
fpktsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvl
wgihhpstsadqqslyqnadayvfvgtskyskkfkpeiairpkvrdqegrmnyywtlvep
gdkitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnih
pitigkcpkyvkstklrlatglrnvpsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >3m6sK (K:)
tlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniagwi
lgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfeifpkts
swpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgihh
pstsadqqslyqnadayvfvgtskyskkfkpeiairpkvrdqegrmnyywtlvepgdkit
featgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpitig
kcpkyvkstklrlatglrnvp

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >3m6sL (L:)
glfgaiagfieggwtgmvdgwygyhhqneqgsgyaadlkstqnaideitnkvnsviekmn
tqftavgkefnhlekrienlnkkiddgfldiwtynaellvllenertldyhdsnvknlye
kvrsqlknnakeigngcfefyhkcdntcmesvkngtydypkyseeaklnreeidsgrlvp
r

    Sequence, based on observed residues (ATOM records): (download) 
    >3m6sL (L:)
lfgaiagfieggwtgmvdgwygyhhqneqgsgyaadlkstqnaideitnkvnsviekmnt
qftavgkefnhlekrienlnkkiddgfldiwtynaellvllenertldyhdsnvknlyek
vrsqlknnakeigngcfefyhkcdntcmesvkngtydypkyseeaklnree