PDB entry 3h5d

View 3h5d on RCSB PDB site
Description: Dihydrodipicolinate Synthase from Drug-Resistant Streptococcus pneumoniae
Class: lyase
Keywords: Dihydrodipicolinate synthase, Lysine Biosynthesis, Amino-acid biosynthesis, Schiff base, Diaminopimelate biosynthesis, Lyase
Deposited on 2009-04-21, released 2010-01-19
The last revision prior to the SCOPe 2.07 freeze date was dated 2013-06-12, with a file datestamp of 2013-06-07.
Experiment type: XRAY
Resolution: 1.99 Å
R-factor: 0.197
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dihydrodipicolinate synthase
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:406556]
    Gene: CGSSp3BS71_00085, dapA
    Database cross-references and differences (RAF-indexed):
    • Uniprot A5LD17 (1-End)
      • expression tag (0)
    Domains in SCOPe 2.07: d3h5da1, d3h5da2
  • Chain 'B':
    Compound: Dihydrodipicolinate synthase
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:406556]
    Gene: CGSSp3BS71_00085, dapA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3h5db_
  • Chain 'C':
    Compound: Dihydrodipicolinate synthase
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:406556]
    Gene: CGSSp3BS71_00085, dapA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3h5dc_
  • Chain 'D':
    Compound: Dihydrodipicolinate synthase
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:406556]
    Gene: CGSSp3BS71_00085, dapA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3h5dd_
  • Heterogens: MES, CO3, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3h5dA (A:)
vsyqdlkeckiitafitpfhedgsinfdaipaliehllahhtdgillagttaesptlthd
eelelfaavqkvvngrvpliagvgtndtrdsiefvkevaefggfaaglaivpyynkpsqe
gmyqhfkaiadasdlpiiiynipgrvvveltpetmlrladhpniigvkectslanmayli
ehkpeefliytgedgdafhamnlgadgvisvashtngdemhemftaiaesdmkkaaaiqr
kfipkvnalfsypspapvkailnymgfeagptrlplvpapeedvkriikvvvdgdyeatk
atvtgvlrpdy

    Sequence, based on observed residues (ATOM records): (download) 
    >3h5dA (A:)
vsyqdlkeckiitafitpfhedgsinfdaipaliehllahhtdgillagttaesptlthd
eelelfaavqkvvngrvpliagvgtndtrdsiefvkevaefggfaaglaivpyynkpsqe
gmyqhfkaiadasdlpiiiynipgrvvveltpetmlrladhpniigvkectslanmayli
ehkpeefliytgedgdafhamnlgadgvisvashtngdemhemftaiaesdmkkaaaiqr
kfipkvnalfsypspapvkailnymgfeagptrlplvpapeedvkriikvvvdgdyea

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3h5dB (B:)
vsyqdlkeckiitafitpfhedgsinfdaipaliehllahhtdgillagttaesptlthd
eelelfaavqkvvngrvpliagvgtndtrdsiefvkevaefggfaaglaivpyynkpsqe
gmyqhfkaiadasdlpiiiynipgrvvveltpetmlrladhpniigvkectslanmayli
ehkpeefliytgedgdafhamnlgadgvisvashtngdemhemftaiaesdmkkaaaiqr
kfipkvnalfsypspapvkailnymgfeagptrlplvpapeedvkriikvvvdgdyeatk
atvtgvlrpdy

    Sequence, based on observed residues (ATOM records): (download) 
    >3h5dB (B:)
syqdlkeckiitafitpfhedgsinfdaipaliehllahhtdgillagttaesptlthde
elelfaavqkvvngrvpliagvgtndtrdsiefvkevaefggfaaglaivpyynkpsqeg
myqhfkaiadasdlpiiiynipgrvvveltpetmlrladhpniigvkectslanmaylie
hkpeefliytgedgdafhamnlgadgvisvashtngdemhemftaiaesdmkkaaaiqrk
fipkvnalfsypspapvkailnymgfeagptrlplvpapeedvkriikvvvdgdyeatk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3h5dC (C:)
vsyqdlkeckiitafitpfhedgsinfdaipaliehllahhtdgillagttaesptlthd
eelelfaavqkvvngrvpliagvgtndtrdsiefvkevaefggfaaglaivpyynkpsqe
gmyqhfkaiadasdlpiiiynipgrvvveltpetmlrladhpniigvkectslanmayli
ehkpeefliytgedgdafhamnlgadgvisvashtngdemhemftaiaesdmkkaaaiqr
kfipkvnalfsypspapvkailnymgfeagptrlplvpapeedvkriikvvvdgdyeatk
atvtgvlrpdy

    Sequence, based on observed residues (ATOM records): (download) 
    >3h5dC (C:)
syqdlkeckiitafitpfhedgsinfdaipaliehllahhtdgillagttaesptlthde
elelfaavqkvvngrvpliagvgtndtrdsiefvkevaefggfaaglaivpyynkpsqeg
myqhfkaiadasdlpiiiynipgrvvveltpetmlrladhpniigvkectslanmaylie
hkpeefliytgedgdafhamnlgadgvisvashtngdemhemftaiaesdmkkaaaiqrk
fipkvnalfsypspapvkailnymgfeagptrlplvpapeedvkriikvvvdgdyeat

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3h5dD (D:)
vsyqdlkeckiitafitpfhedgsinfdaipaliehllahhtdgillagttaesptlthd
eelelfaavqkvvngrvpliagvgtndtrdsiefvkevaefggfaaglaivpyynkpsqe
gmyqhfkaiadasdlpiiiynipgrvvveltpetmlrladhpniigvkectslanmayli
ehkpeefliytgedgdafhamnlgadgvisvashtngdemhemftaiaesdmkkaaaiqr
kfipkvnalfsypspapvkailnymgfeagptrlplvpapeedvkriikvvvdgdyeatk
atvtgvlrpdy

    Sequence, based on observed residues (ATOM records): (download) 
    >3h5dD (D:)
syqdlkeckiitafitpfhedgsinfdaipaliehllahhtdgillagttaesptlthde
elelfaavqkvvngrvpliagvgtndtrdsiefvkevaefggfaaglaivpyynkpsqeg
myqhfkaiadasdlpiiiynipgrvvveltpetmlrladhpniigvkectslanmaylie
hkpeefliytgedgdafhamnlgadgvisvashtngdemhemftaiaesdmkkaaaiqrk
fipkvnalfsypspapvkailnymgfeagptrlplvpapeedvkriikvvvdgdyeat