PDB entry 3elc

View 3elc on RCSB PDB site
Description: Crystal structure of 2C-methyl-D-erythritol 2,4-clycodiphosphate synthase complexed with ligand
Class: lyase
Keywords: MECDP-synthase, Isoprene biosynthesis, Lyase, Magnesium, Manganese, Metal-binding
Deposited on 2008-09-22, released 2009-08-25
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: ISPF
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62617 (6-End)
      • expression tag (5)
    Domains in SCOPe 2.07: d3elca1, d3elca2
  • Chain 'B':
    Compound: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: ISPF
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62617 (6-End)
      • expression tag (5)
    Domains in SCOPe 2.07: d3elcb1, d3elcb2
  • Chain 'C':
    Compound: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: ISPF
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62617 (6-End)
      • expression tag (5)
    Domains in SCOPe 2.07: d3elcc1, d3elcc2
  • Heterogens: ZN, F01, GPP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3elcA (A:)
gshmlemrighgfdvhafggegpiiiggvripyekgllahsdgdvalhaltdallgaaal
gdigklfpdtdpafkgadsrellreawrriqakgytlgnvdvtiiaqapkmlphipqmrv
fiaedlgchmddvnvkattteklgftgrgegiaceavallikatk

    Sequence, based on observed residues (ATOM records): (download) 
    >3elcA (A:)
emrighgfdvhafggegpiiiggvripyekgllahsdgdvalhaltdallgaaalgdigk
lfpdtdpafkgadsrellreawrriqakgytlgnvdvtiiaqapkmlphipqmrvfiaed
lgchmddvnvkattteklgftgrgegiaceavallik

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3elcB (B:)
gshmlemrighgfdvhafggegpiiiggvripyekgllahsdgdvalhaltdallgaaal
gdigklfpdtdpafkgadsrellreawrriqakgytlgnvdvtiiaqapkmlphipqmrv
fiaedlgchmddvnvkattteklgftgrgegiaceavallikatk

    Sequence, based on observed residues (ATOM records): (download) 
    >3elcB (B:)
emrighgfdvhafggegpiiiggvripyekgllahsdgdvalhaltdallgaaalgdigk
lfpdtdpafkgadsrellreawrriqakgytlgnvdvtiiaqapkmlphipqmrvfiaed
lgchmddvnvkattteklgftgrgegiaceavallik

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3elcC (C:)
gshmlemrighgfdvhafggegpiiiggvripyekgllahsdgdvalhaltdallgaaal
gdigklfpdtdpafkgadsrellreawrriqakgytlgnvdvtiiaqapkmlphipqmrv
fiaedlgchmddvnvkattteklgftgrgegiaceavallikatk

    Sequence, based on observed residues (ATOM records): (download) 
    >3elcC (C:)
emrighgfdvhafggegpiiiggvripyekgllahsdgdvalhaltdallgaaalgdigk
lfpdtdpafkgadsrellreawrriqakgytlgnvdvtiiaqapkmlphipqmrvfiaed
lgchmddvnvkattteklgftgrgegiaceavallik