PDB entry 3d0c

View 3d0c on RCSB PDB site
Description: Crystal structure of dihydrodipicolinate synthase from Oceanobacillus iheyensis at 1.9 A resolution
Class: lyase
Keywords: Lysine biosynthesis, Pyruvate, TIM barrel, NYSGXRC, 9375o, PSI-2, Structural Genomics, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, Lyase
Deposited on 2008-05-01, released 2008-05-13
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-06-09, with a file datestamp of 2009-06-05.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.218
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dihydrodipicolinate synthase
    Species: Oceanobacillus iheyensis HTE831 [TaxId:221109]
    Gene: OB2845, DHDPS
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8EMJ7 (3-End)
      • expression tag (2)
      • engineered (179)
    Domains in SCOPe 2.07: d3d0ca1, d3d0ca2
  • Chain 'B':
    Compound: Dihydrodipicolinate synthase
    Species: Oceanobacillus iheyensis HTE831 [TaxId:221109]
    Gene: OB2845, DHDPS
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8EMJ7 (3-End)
      • engineered (179)
    Domains in SCOPe 2.07: d3d0cb_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3d0cA (A:)
msldygefskrfstisginivpflegtreidwkglddnvefllqngievivpngntgefy
altieeakqvatrvtelvngratvvagigysvdtaielgksaidsgadcvmihqpvhpyi
tdagaveyyrniiealdapsiiyfkdahlsddvikelapldklvgikyaindiqrvtqvm
ravpkssnvaficgtaekwapffyhagavgftsglvnvfpqksfallealeegnqekiwd
vwedvvpfedlrakhnngnnvviikeameqlglragvtrepvnplspndrleleellksw
ntqevreghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3d0cA (A:)
ldygefskrfstisginivpflegtreidwkglddnvefllqngievivpngntgefyal
tieeakqvatrvtelvngratvvagigysvdtaielgksaidsgadcvmihqpvhpyitd
agaveyyrniiealdapsiiyfkdahlsddvikelapldklvgikyaindiqrvtqvmra
vpkssnvaficgtaekwapffyhagavgftsglvnvfpqksfallealeegnqekiwdvw
edvvpfedlrakhnngnnvviikeameqlglragvtrepvnplspndrleleellkswnt
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  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3d0cB (B:)
msldygefskrfstisginivpflegtreidwkglddnvefllqngievivpngntgefy
altieeakqvatrvtelvngratvvagigysvdtaielgksaidsgadcvmihqpvhpyi
tdagaveyyrniiealdapsiiyfkdahlsddvikelapldklvgikyaindiqrvtqvm
ravpkssnvaficgtaekwapffyhagavgftsglvnvfpqksfallealeegnqekiwd
vwedvvpfedlrakhnngnnvviikeameqlglragvtrepvnplspndrleleellksw
ntqevreghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3d0cB (B:)
dygefskrfstisginivpflegtreidwkglddnvefllqngievivpngntgefyalt
ieeakqvatrvtelvngratvvagigysvdtaielgksaidsgadcvmihqpvhpyitda
gaveyyrniiealdapsiiyfkdahlsddvikelapldklvgikyaindiqrvtqvmrav
pkssnvaficgtaekwapffyhagavgftsglvnvfpqksfallealeegnqekiwdvwe
dvvpfedlrakhnngnnvviikeameqlglragvtrepvnplspndrleleellkswntq